Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_018293 |
| gene name | ccl38.1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 39332579 ~ 39333799 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ccl38.1 | Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis; immune response; and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. |
| id | name | namespace |
|---|---|---|
| GO:0043547 | positive regulation of GTPase activity | biological_process |
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0002548 | monocyte chemotaxis | biological_process |
| GO:0006935 | chemotaxis | biological_process |
| GO:0006954 | inflammatory response | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:0071346 | cellular response to interferon-gamma | biological_process |
| GO:0071347 | cellular response to interleukin-1 | biological_process |
| GO:0071356 | cellular response to tumor necrosis factor | biological_process |
| GO:0048247 | lymphocyte chemotaxis | biological_process |
| GO:0070098 | chemokine-mediated signaling pathway | biological_process |
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0048020 | CCR chemokine receptor binding | molecular_function |
| GO:0008009 | chemokine activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041014-320 | Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including cellular response to cytokine stimulus; leukocyte chemotaxis; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within chemotaxis; immune response; and response to virus. Predicted to be located in extracellular region. Predicted to be active in extracellular space. |
| ensembl_id | ENSDARG00000041919 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00036016 | False | 670 | mRNA | 0.39 | 3 | 39332579 | 39333799 |
| TCONS_00036017 | True | 321 | mRNA | 0.45 | 4 | 39332795 | 39333657 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_018292 | clu | coding | downstream | 58592 | 39260475 ~ 39273987 (-) |
| XLOC_018291 | cyp39a1 | coding | downstream | 113042 | 39190854 ~ 39219537 (-) |
| XLOC_018290 | rcan2 | coding | downstream | 144103 | 39055432 ~ 39188476 (-) |
| XLOC_018289 | BX569784.1 | coding | downstream | 299643 | 39032821 ~ 39032936 (-) |
| XLOC_018287 | BX511178.2 | coding | downstream | 415207 | 38892235 ~ 38917372 (-) |
| XLOC_018294 | ccdc25 | coding | upstream | 4901 | 39338700 ~ 39344130 (-) |
| XLOC_018295 | pbk | coding | upstream | 25930 | 39359729 ~ 39368079 (-) |
| XLOC_018296 | NA | coding | upstream | 42084 | 39375883 ~ 39502967 (-) |
| XLOC_018297 | si:dkey-217m5.8 | coding | upstream | 55978 | 39389777 ~ 39391833 (-) |
| XLOC_018298 | NA | coding | upstream | 70410 | 39404209 ~ 39404969 (-) |
| XLOC_017928 | CU539064.1 | misc | downstream | 29278878 | 10053405 ~ 10053701 (-) |
| XLOC_018288 | dre-mir-124-2 | non-coding | downstream | 426966 | 38905531 ~ 38905613 (-) |
| XLOC_018282 | NA | non-coding | downstream | 661519 | 38664764 ~ 38671060 (-) |
| XLOC_018279 | BX569783.1 | non-coding | downstream | 824058 | 38504733 ~ 38508521 (-) |
| XLOC_018277 | NA | non-coding | downstream | 959485 | 38358361 ~ 38373094 (-) |
| XLOC_018299 | NA | non-coding | upstream | 77045 | 39410844 ~ 39414258 (-) |
| XLOC_018303 | BX936317.1 | non-coding | upstream | 268057 | 39601856 ~ 39686127 (-) |
| XLOC_018305 | NA | non-coding | upstream | 410396 | 39744195 ~ 39746437 (-) |
