XLOC_018295 (pbk)


Basic Information

Item Value
gene id XLOC_018295
gene name pbk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39359729 ~ 39368079 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036021
AAACAAAACCGGTTAATTTCAAATACGGGCGCGTTGTTCGGCATATCCGGAGTTtacataaataCAAATGGAGGCCAGCAAAGAATCACCGAGTGCCTTTAAAACACCTTGCAAGCCTGCTAAAGTGAAAAGTCCAGTCAATGCTTGTGGGACCCCAGTCACCATTCCTGCCTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTTTACCTCATGAACAGGATGGGGAAACAGACTCATTCTCCATGGGCTATAAAGAAGATCAACAGCAAGTGTGCTCAAGGTCAAGTGAGTGTTTATCAGAAGCGTCTCTGTGAGGAGGCCAAGATCTTGAAGGACCTCAAGCACCCCAATATTGTTGgcTTCAGAGCTTTTACCACTGCGAAGGATGGCTCGAAGTGTCTAGCGATGGAGTTTGGCGGAGAACAGTCTCTCAATGACCTGATTGAGAAGAGGAGAGAGGAGGGTCTGCAGGCCTTTCCAGTGGACACTATTGAAAAAGTGGCTCTTCATGTCGCTCGCGGTTTACTGtactTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCATGCAATGTTGTCATCAAGGGCGATTTTGAGAGCATCAAAATCTGTGATGTTGGTGTTTCACTGCCACTGGATGAAAACATGCAAGTGAGTGATCCAAAGGCTCATTACATTGGGACGGAGCCGTGGAAGCCCAAAGAAGCTTTGGAGGATGGAGTAATCACAGATAAAGCTGATATCTTTGCCTATGGACTCACACTGTGGGAAATGATGACGCTTTCTGTTCCTCACCTGGAGATGCTGGACACTGAgggtgatgaagatgatgatgACGAGTCATTTGAGGAGGATTTTGATGAAGATGCATATTATGAGCGGCTGGGGTCTCGACCGGCTCTGGACGCAGTGACTCTGGGAGGCTCTTATCAGAGGATGGTGGAGCTCTTCTGTCTCTGCACAGAGGAGGACCCTCAGAAAAGACCCTCAGCAGCTCACATTGTGCAGGTGCTGGAGTCAAACAGCCAGCTTTCCAAGCAAAACACTGAGGTAATTGTAATCGATTAAATGCTCAGTTGCATTCCTGTCAACGACGAATGCTGAAAATTCTGTTTCTCCGAGTCTGAGTTGTGTGTTTGAGGAaaagaacatcatttttgttttatttcatgctGTGAACTGATGACATTTAGAGGatctttttacaaaaaataattgaaaaggtGCCATGTTTTCATACTCTAATGGCCATTTTTAACTTCAGAATGGTTAAAAAAGcaatatatgctggaataaccctgattttcattCAAATCAAGTCATAATAATTGTTATtcggactgttttttttttttttgtgggggggggggggggtggaagGAAAAACACctggaagaaatgttatcagatcttttattgaataaaacaaatattaacattttcctGAACCCTACTTTTACTAAGAAATTGAGAGAAACTcagaatttgatttatttttggttCCCTTGCTGTATGTTTACCTCTAGGGATTTTACTGTTTGAGATCTTTGTCACGTTGTAAATATGTTTCTGTTTAAAATGAGTCATGTTGCATAAGGTCTTATGTACTCTGCTGATTTCAGACATGCTCTCGATCATACTGTAACTGCAGTCAAATTTGAAATAAACTGTCTGTGAACTTCA
>TCONS_00036022
GAAAAGCAAACGAAACGCACGCAATCATTGTTGTCCCACCACGGCCACTGTAGCGTTACGTACGTTTGACGTCAAACAAAACCGGTTAATTTCAAATACGGGCGCGTTGTTCGGCATATCCGGAGTTtacataaatgtaattaaaatagtttatattATCTAAATGTCTCATGTTGCGATTATATTTTGATATGTAGTTTCTGCAGTTGTGTATTAGCGTGATTACATTAGTGTAACTTGTGTAACCTTTAAGGTTTTGTCTTGCTAATCGtggcaatgtaaacaaaatacgATGATGAtcttttattgtttcattttagaCAAATGGAGGCCAGCAAAGAATCACCGAGTGCCTTTAAAACACCTTGCAAGCCTGCTAAAGTGAAAAGTCCAGTCAATGCTTGTGGGACCCCAGTCACCATTCCTGCCTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTTTACCTCATGAACAGGATGGGGAAACAGACTCATTCTCCATGGGCTATAAAGAAGATCAACAGCAAGTGTGCTCAAGGTCAAGTGAGTGTTTATCAGAAGCGTCTCTGTGAGGAGGCCAAGATCTTGAAGGACCTCAAGCACCCCAATATTGTTGgcTTCAGAGCTTTTACCACTGCGAAGGATGGCTCGAAGTGTCTAGCGATGGAGTTTGGCGGAGAACAGTCTCTCAATGACCTGATTGAGAAGAGGAGAGAGGAGGGTCTGCAGGCCTTTCCAGTGGACACTATTGAAAAAGTGGCTCTTCATGTCGCTCGCGGTTTACTGtactTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCATGCAATGTTGTCATCAAGGGCGATTTTGAGAGCATCAAAATCTGTGATGTTGGTGTTTCACTGCCACTGGATGAAAACATGCAAGTGAGTGATCCAAAGGCTCATTACATTGGGACGGAGCCGTGGAAGCCCAAAGAAGCTTTGGAGGATGGAGTAATCACAGATAAAGCTGATATCTTTGCCTATGGACTCACACTGTGGGAAATGATGACGCTTTCTGTTCCTCACCTGGAGATGCTGGACACTGAgggtgatgaagatgatgatgACGAGTCATTTGAGGAGGATTTTGATGAAGATGCATATTATGAGCGGCTGGGGTCTCGACCGGCTCTGGACGCAGTGACTCTGGGAGGCTCTTATCAGAGGATGGTGGAGCTCTTCTGTCTCTGCACAGAGGAGGACCCTCAGAAAAGACCCTCAGCAGCTCACATTGTGCAGGTGCTGGAGTCAAACAGCCAGCTTTCCAAGCAAAACACTGAGGTAATTGTAATCGATTAAATGCTCAGTTGCATTCCTGTCAACGACGAATGCTGAAAATTCTGTTTCTCCGAGTCTGAGTTGTGTGTTTGAGGAaaagaacatcatttttgttttatttcatgctGTGAACTGATGACATTTAGAGGatctttttacaaaaaataattgaaaaggtGCCATGTTTTCATACTCTAATGGCCATTTTTAACTTCAGAATGGTTAAAAAAGcaatatatgctggaataaccctgattttcattCAAATCAAGTCATAATAATTGTTATtcggactgttttttttttttttgtgggggggggggggggtggaagGAAAAACACctggaagaaatgttatcagatcttttattgaataaaacaaatattaacattttcctGAACCCTACTTTTACTAAGAAATTGAGAGAAACTcagaatttgatttatttttggttCCCTTGCTGTATGTTTACCTCTAGGGATTTTACTGTTTGAGATCTTTGTCACGTTGTAAATATGTTTCTGTTTAAAATGAGTCATGTTGCATAAGGTCTTATGTACTCTGCTGATTTCAGACATGCTCTCGATCATACTGTAACTGCAGTCAAATTTGAAATAAACTGTCTGTGAACTTC
>TCONS_00036023
TTTTGATATGTAGTTTCTGCAGTTGTGTATTAGCGTGATTACATTAGTGTAACTTGTGTAACCTTTAAGGTTTTGTCTTGCTAATCGtggcaatgtaaacaaaatacgATGATGAtcttttattgtttcattttagaCAAATGGAGGCCAGCAAAGAATCACCGAGTGCCTTTAAAACACCTTGCAAGCCTGCTAAAGTGAAAAGTCCAGTCAATGCTTGTGGGACCCCAGTCACCATTCCTGCCTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTTTACCTCATGAACAGGATGGGGAAACAGACTCATTCTCCATGGGCTATAAAGAAGATCAACAGCAAGTGTGCTCAAGGTCAAGTGAGTGTTTATCAGAAGCGTCTCTGTGAGGAGGCCAAGATCTTGAAGGACCTCAAGCACCCCAATATTGTTGgcTTCAGAGCTTTTACCACTGCGAAGGATGGCTCGAAGTGTCTAGCGATGGAGTTTGGCGGAGAACAGTCTCTCAATGACCTGATTGAGAAGAGGAGAGAGGAGGGTCTGCAGGCCTTTCCAGTGGACACTATTGAAAAAGTGGCTCTTCATGTCGCTCGCGGTTTACTGtactTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCATGCAATGTTGTCATCAAGGGCGATTTTGAGAGCATCAAAATCTGTGATGTTGGTGTTTCACTGCCACTGGATGAAAACATGCAAGG

Function

symbol description
pbk Predicted to enable ATP binding activity; MAP kinase kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PBK (PDZ binding kinase).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004708 MAP kinase kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-030523-2 Predicted to enable ATP binding activity; MAP kinase kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PBK (PDZ binding kinase).

Ensembl:

ensembl_id ENSDARG00000007221

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036021 False 1702 mRNA 0.43 8 39359729 39368006
TCONS_00036022 False 1958 mRNA 0.42 7 39359730 39368079
TCONS_00036023 True 745 mRNA 0.44 5 39363148 39367895

Neighbor

gene id symbol gene type direction distance location
XLOC_018294 ccdc25 coding downstream 15599 39338700 ~ 39344130 (-)
XLOC_018293 ccl38.1 coding downstream 25930 39332579 ~ 39333799 (-)
XLOC_018292 clu coding downstream 85742 39260475 ~ 39273987 (-)
XLOC_018291 cyp39a1 coding downstream 140192 39190854 ~ 39219537 (-)
XLOC_018290 rcan2 coding downstream 171253 39055432 ~ 39188476 (-)
XLOC_018296 NA coding upstream 7804 39375883 ~ 39502967 (-)
XLOC_018297 si:dkey-217m5.8 coding upstream 21698 39389777 ~ 39391833 (-)
XLOC_018298 NA coding upstream 36130 39404209 ~ 39404969 (-)
XLOC_018299 NA coding upstream 42765 39410844 ~ 39414258 (-)
XLOC_018300 SLC35D3 coding upstream 145356 39513435 ~ 39517164 (-)
XLOC_017928 CU539064.1 misc downstream 29306028 10053405 ~ 10053701 (-)
XLOC_018289 BX569784.1 non-coding downstream 326793 39032821 ~ 39032936 (-)
XLOC_018288 dre-mir-124-2 non-coding downstream 454116 38905531 ~ 38905613 (-)
XLOC_018282 NA non-coding downstream 688669 38664764 ~ 38671060 (-)
XLOC_018279 BX569783.1 non-coding downstream 851208 38504733 ~ 38508521 (-)
XLOC_018277 NA non-coding downstream 986635 38358361 ~ 38373094 (-)
XLOC_018303 BX936317.1 non-coding upstream 233777 39601856 ~ 39686127 (-)
XLOC_018305 NA non-coding upstream 376116 39744195 ~ 39746437 (-)

Expression


Co-expression Network