XLOC_018299


Basic Information

Item Value
gene id XLOC_018299
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39410844 ~ 39414258 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036027
TGGCAGTGAAATATTTGTGAAGGAGGGCCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGTCTTGGATTGCTAAGGGACATGGACTCCCATGGCAAGGACATATACATTAAGGACTTttttgttctccctgtgtggaAAACAACTCCTAACAACATTGTTACTGGATTACCGGAAAATTGCTTACCAAGTTGATCATGGGACATGGACTGAAAAGACTGGATATGATTTTCCACCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCGAGGagATGGATATGCCTGTCATTCGTCAGTGGTGGTGTCTTCTCATGGAACGATTTCAGATTGATGGGTATGTCAgttaaattttcttttaaatctgtCAAATTTAAATGTGATATTGTGTCAATACAACAACTCTGTAACACGAATAACAAAACATCCTTAATATCTATCTTACCGGTGACCAGTTATCATGGATTTTGTC
>TCONS_00036026
AGAAAAAATGAGAAACGTCTTCATGACATAAACAAGGAATTCAACAAAAACATTCACATGAATGACCCCAGCCAGGTTGTTTTAGaaAATCCGTTGTCCACAGAGAAGGTCATGGACTTGTCACTTGACCACTGACAGCACTGCCAGAAAATATTGTGGCTGCACAAATGACTGCTGCATCACCAGGCATATCATCTGTCACATCTCCTCAGTCATCagtaccaattacagaaaaatctGCTTGTGAACCTACTAAGCCTTGGGAGAGGGACTGGCATCCATTACAAGAAAAACTGctTGATTATGTGCTGGAGCGAAATCGGCCTGGCAGTGAAATATTTGTGAAGGAGGGCCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGTCTTGGATTGCTAAGGGACATGGACTCCCATATTGGAAACGCCTGCATGAAGCTTATTTGTGAAATGGCTCGGCAAATTGGCAAGGACATATACATTAAGGACTTttttgttctccctgtgtggaAAACAACTCCTAACAACATTGTTACTGGATTACCGGAAGATGCAGACTTGAAAGACCTGTTAGCCTTTCCAGCATGGACAAATGCAAATGGACCAGACCACTTCGTTGTCTGTGAAAATTGCTTACCAAGTTGATCATGGGACATGGACTGAAAAGACTGGATATGATTTTCCACCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCGAGGagATGGATATGCCTGTCATTCGTCAGTGGTGGTGTCTTCTCATGGAACGATTTCAGATTGATGGGTATGTCAgttaaattttcttttaaatctgtCAAATTTAAATGTGATATTGTGTCAATACAACAACTCTGTAACACGAATAACAAAACATCCTTAATATCTATCTTACCGGTGACCAGTTATCATGGATTTTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095211

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036027 False 526 lncRNA 0.40 6 39410844 39413686
TCONS_00036026 True 977 lncRNA 0.41 11 39410844 39414258

Neighbor

gene id symbol gene type direction distance location
XLOC_018298 NA coding downstream 5875 39404209 ~ 39404969 (-)
XLOC_018297 si:dkey-217m5.8 coding downstream 19011 39389777 ~ 39391833 (-)
XLOC_018295 pbk coding downstream 42765 39359729 ~ 39368079 (-)
XLOC_018294 ccdc25 coding downstream 66714 39338700 ~ 39344130 (-)
XLOC_018293 ccl38.1 coding downstream 77045 39332579 ~ 39333799 (-)
XLOC_018300 SLC35D3 coding upstream 99177 39513435 ~ 39517164 (-)
XLOC_018301 pex7 coding upstream 106370 39520628 ~ 39582316 (-)
XLOC_018302 hey2 coding upstream 174639 39588897 ~ 39596338 (-)
XLOC_018303 BX936317.1 coding upstream 187598 39601856 ~ 39686127 (-)
XLOC_018304 tpd52l1 coding upstream 277535 39691793 ~ 39735987 (-)
XLOC_017928 CU539064.1 misc downstream 29357143 10053405 ~ 10053701 (-)
XLOC_018289 BX569784.1 non-coding downstream 377908 39032821 ~ 39032936 (-)
XLOC_018288 dre-mir-124-2 non-coding downstream 505231 38905531 ~ 38905613 (-)
XLOC_018282 NA non-coding downstream 739784 38664764 ~ 38671060 (-)
XLOC_018279 BX569783.1 non-coding downstream 902323 38504733 ~ 38508521 (-)
XLOC_018305 NA non-coding upstream 329937 39744195 ~ 39746437 (-)
XLOC_018308 CR847530.1 non-coding upstream 504974 39919232 ~ 39920174 (-)
XLOC_018309 NA non-coding upstream 801111 40215369 ~ 40254485 (-)
XLOC_018311 NA non-coding upstream 915848 40330106 ~ 40336899 (-)

Expression


Co-expression Network