XLOC_018301 (pex7)


Basic Information

Item Value
gene id XLOC_018301
gene name pex7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39520628 ~ 39582316 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036032
ATGTTTTGCGCTAATATGGAAGTTAAGCAGGGCAATTGTTTCATTTGTACAGTACAATTATAGGTTTAATCGTTTTAAACGTTTTCCTAGGTGACAGTACGTATATTGGTGGTTTTCCACAAACAAAAAACGTTATTTATTGTAAATGGGTTGTTCGTGGACTTTAGACTATTTCTGCACTCGTTGAGTTATTAGAGAAACGGTATGAAGTCGTTTAAGTCTCCGGGACGTCATGGATATGCGGTGGAGATTTCACCTTTTTTGCCTTCTACGATGGCATGTGCTTCCTCTCAGTATTATGGAATAGCAGGATGTGGGACACTTTTTGTGCTGGAGCAACGGGAGACAGATGTTTCACTTGTGAAgagTTTTGACTGGAACGATGGTCTTTTCGATGTGACATGGAGTGAGAACAATGAGCATGTGCTAGTGACCGGAGGAGGTGACGGATCTCTGCAGATCTGGGATACAGCCAATCCACAAGGTCTTCTGCAGGTGCTGAAAGGCCACACACAAGAGGTGTATTCAGTAGACTGGAGTCAAACACGTGCTGAAAACCTGCTAGTATCAGGATCTTGGGACCACACAGCCAAAGTGTGGGATCCAGTGCAGTGTCAGTTAGTGAACTCCCTTCAGGGTCATGAGGGTGTCATCTACAGCACCATCTGGTCTCCTCATATCCCAGCATGCTTTGCTTCGGCCTCAGGAGACGGCACTCTGCGAGTATGGGATGTTAAGGCAGGGTCATGCAGATTGGTCATCCCTGCACACAAATCTGAAATCCTTAGCTGTGATTGGTGCAAATATGACCAGAATGTTCTAGTCACCGGAGCTGTTGACTGCAGTCTCCGAGTTTGGGACCTGAGGAACATCCGGCATCCCGTCGCTCAAATGTCAGGCCATTCCTACGCCATCCGCAGAGTAAAGTTCTGCCCGTTTTACAAGACCGTCCTAGCGTCCTGCTCATATGATTTCACAGTCAGATTCTGGGATTATTCCAAGAGCCAGGCGCTGCTGGAGACGCTGGAGCACCACTCGGAGTTCGTGTGTGGCCTGGATTTCAACCTGCACATCCCTAACCAGGTTGTGGACTGCTCCTGGGACGAGACTGTGAAAGTGTTCAGTCCTTCATCTCTGGCTGCGGTGTAGAAACCCGTTCACCATGTACTGAGGTTTCTGCAGGACATAAGGGAATCACGGCTCCATTTCAATCACAGGTGCAGAGTTTGCCAAGATTTCACTGCAGTTTTCCTAATGACGCTGTTACAGCAGAACCCGAGGGAGCGCTAGAATCTCACACCTCGCCTTTAGGAGTGTGATGTTATTATAGTGCTTGATGAGTGTAAAATCAAGCTAAAGTGAGTTTACCTTAAACGGTGAGTGCCTTATTGATGTCTAATAATTTTGTGGTAGGTGTATGTTGTTTTTCTCTAATGGATTAAATCCGGTTTGTTAAACTTGTGTTAATAAATAAGAGCAGTTCATC
>TCONS_00036033
AAAACACGGAAGTAAACACTTGTCATACACATGTTTTGCGCTAATATGGAAGTTAAGCAGGGCAATTGTTTCATTTGTACAGTACAATTATAGGTTTAATCGTTTTAAACGTTTTCCTAGGTGACAGTACGTATATTGGTGGTTTTCCACAAACAAAAAACGTTATTTATTGTAAATGGGTTGTTCGTGGACTTTAGACTATTTCTGCACTCGTTGAGTTATTAGAGAAACGGTATGAAGTCGTTTAAGTCTCCGGGACGTCATGGATATGCGGTGGAGATTTCACCTTTTTTGCCTTCTACGATGGCATGTGCTTCCTCTCAGTATTATGGAATAGCAGGATGTGGGACACTTTTTGTGCTGGAGCAACGGGAGACAGATGTTTCACTTGTGAAgagTTTTGACTGGAACGATGGTCTTTTCGATGTGACATGGAGTGAGAACAATGAGCATGTGCTAGTGACCGGAGGAGGTGACGGATCTCTGCAGATCTGGGATACAGCCAATCCACAAGGTCTTCTGCAGGTGCTGAAAGGCCACACACAAGAGGTGTATTCAGTAGACTGGAGTCAAACACGTGCTGAAAACCTGCTAGTATCAGGATCTTGGGACCACACAGCCAAAGTGTGGGATCCAGTGCAGTGTCAGTTAGTGAACTCCCTTCAGGGTCATGAGGGTGTCATCTACAGCACCATCTGGTCTCCTCATATCCCAGCATGCTTTGCTTCGGCCTCAG

Function

symbol description
pex7 Predicted to enable peroxisome matrix targeting signal-2 binding activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be active in cytosol and peroxisomal matrix. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and rhizomelic chondrodysplasia punctata type 1. Orthologous to human PEX7 (peroxisomal biogenesis factor 7).

GO:

id name namespace
GO:0016558 protein import into peroxisome matrix biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0005829 cytosol cellular_component
GO:0005053 peroxisome matrix targeting signal-2 binding molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-050320-105 Predicted to enable peroxisome matrix targeting signal-2 binding activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be active in cytosol and peroxisomal matrix. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and rhizomelic chondrodysplasia punctata type 1. Orthologous to human PEX7 (peroxisomal biogenesis factor 7).

Ensembl:

ensembl_id ENSDARG00000042553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036032 False 1486 mRNA 0.46 10 39520628 39582286
TCONS_00036033 True 736 mRNA 0.45 5 39576311 39582316

Neighbor

gene id symbol gene type direction distance location
XLOC_018300 SLC35D3 coding downstream 3464 39513435 ~ 39517164 (-)
XLOC_018296 NA coding downstream 17661 39375883 ~ 39502967 (-)
XLOC_018299 NA coding downstream 106370 39410844 ~ 39414258 (-)
XLOC_018298 NA coding downstream 115659 39404209 ~ 39404969 (-)
XLOC_018297 si:dkey-217m5.8 coding downstream 128795 39389777 ~ 39391833 (-)
XLOC_018302 hey2 coding upstream 6581 39588897 ~ 39596338 (-)
XLOC_018303 BX936317.1 coding upstream 19540 39601856 ~ 39686127 (-)
XLOC_018304 tpd52l1 coding upstream 109477 39691793 ~ 39735987 (-)
XLOC_018305 NA coding upstream 161879 39744195 ~ 39746437 (-)
XLOC_018306 rnf217 coding upstream 167132 39749448 ~ 39789846 (-)
XLOC_017928 CU539064.1 misc downstream 29466927 10053405 ~ 10053701 (-)
XLOC_018289 BX569784.1 non-coding downstream 487692 39032821 ~ 39032936 (-)
XLOC_018288 dre-mir-124-2 non-coding downstream 615015 38905531 ~ 38905613 (-)
XLOC_018308 CR847530.1 non-coding upstream 336916 39919232 ~ 39920174 (-)
XLOC_018309 NA non-coding upstream 633053 40215369 ~ 40254485 (-)
XLOC_018311 NA non-coding upstream 747790 40330106 ~ 40336899 (-)

Expression


Co-expression Network