XLOC_018303 (BX936317.1)


Basic Information

Item Value
gene id XLOC_018303
gene name BX936317.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39601856 ~ 39686127 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036035
ATGTGTTTGTAAGTTTCTACGACAGCAAAGAAGCTGAAGCTGATATAAGAGACATTTATCAACAGTTTTAAGAAAATttgagaagcagcagcagctatGGACCCTAATGTCAACCGTGGTTCGCTCGAACTTGCCTGAGGACACTCCAACGTCAGCGAACCGGATGTAAAACAGTCCGAAAGAGGGAATTGCCTGCTGTTGTAATGACAGACTGCCGCCGCTAGATAGAGATAGAATACAGGAGTCAACAGGGTCTTACAATTCAAGCACAACTCAACGATGGCAAACCAGTCAGCATAATGTATTTCTTGGGCAGCAGAGAGATCAAGCAATGGAACAGGAAACACACAGATGtttactatggacaattttgCTCTGACACACAGTGACATGTCCTATTGCGTTTTCTGCCAGTGGGAAAGGCATCAGCGGAGTCTCTGGGAGCTGTCCTGAACACCTCTCGCTCTGCGTTTCCCCTGGTGTGAATGTGGAACTCTAAATCAATCTCATCACAGACTTCCTACAATATCTACAAGACCTCTGCTGCATTGAGTATTCAGACCAAATGTTCATCATAAGGTTCCGACCTCCAACAGTGGAAGCGAAGCTATTGTGTAAATACCATAGGTGCCACAGTGAATAAAAGGTCACACCTGGGAGAGCTGCTGCCTGCTATGAGAGACTGTTGACAGCTTGATTGGAGCTACTGTATCTGTGCTGACCACTGGATCTGGAGCAGCTCTACACAGGTTTGTGTATTttgttaaa
>TCONS_00036036
TTATTTCATAGCAGTCGTCGACAAGTACGTTACAAATGTGTTTGTAAGTTTCTACGACAGCAAAGAAGCTGAAGCTGATATAAGAGACATTTATCAACAGTTTTAAGAAAATttgagaagcagcagcagctatGGACCCTAATGTCAACCGTGGTTCGCTCGAACTTGCCTGAGGACACTCCAACGTCAGCGAACCGGATGTAAAACAGTCCGAAAGAGGGAATTGCCTGCTGTTGTAATGACAGACTGCCGCCGCTAGATAGAGATAGAATACAGGAGTCAACAGGGTCTTACAATTCAAGCACAACTCAACGATGGCAAACCAGTCAGCATAATGTATTTCTTGGGCAGCAGAGAGATCAAGCAATGGAACAGGAAACACACAGATGtttactatggacaattttgTGGGAAAGGCATCAGCGGAGTCTCTGGGAGCTGTCCTGAACACCTCTCGCTCTGCGTTTCCCCTGGTGTGAATGTAAGATTCCTTCAGCTGATCGCAGCCCTTCTGATGACAGGTGGAACTCTAAATCAATCTCATCACAGACTTCCTACAATATCTACAAGACCTCTGCTGCATTGAGTATTCAGACCAAATGTTCATCATAAGGTTCCGACCTCCAACAGTGGAAGCGAAGCTATTGTGTAAATACCATAGGTGCCACAGTGAATAAAAGGTCACACCTGGGAGAGCTGCTGCCTGCTATGAGAGACTGTTGACAGCTTGATTGGAGCTACTGTATCTGTGCTGACCACTGGATCTGGAGCAGCTCTACACAGGTTTGTGTATTttgttaaa
>TCONS_00036037
ATGTGTTTGTAAGTTTCTACGACAGCAAAGAAGCTGAAGCTGATATAAGAGACATTTATCAACAGTTTTAAGAAAATttgagaagcagcagcagctatGGACCCTAATGTCAACCGTGGTTCGCTCGAACTTGCCTGAGGACACTCCAACGTCAGCGAACCGGATGTAAAACAGTCCGAAAGAGGGAATTGCCTGCTGTTGTAATGACAGACTGCCGCCGCTAGATAGAGATAGAATACAGGAGTCAACAGGGTCTTACAATTCAAGCACAACTCAACGATGGCAAACCAGTCAGCATAATGTATTTCTTGGGCAGCAGAGAGATCAAGCAATGGAACAGGAAACACACAGATGtttactatggacaattttgCTCTGACACACAGTGACATGTCCTATTGCGTTTTCTGCCAGTGGGAAAGGCATCAGCGGAGTCTCTGGGAGCTGTCCTGAACACCTCTCGCTCTGCGTTTCCCCTGGTGTGAATGTAAGATTCCTTCAGCTGATCGCAGCCCTTCTGATGACAG
>TCONS_00036038
AGCAACTGTTGCTCGCTTCCAAAACGATTTGATTGTTTCAGCTGTTTAATAGCTTACTTTATTTCATAGCAGTCGTCGACAAGTACGTTACAAATGTGTTTGTAAGTTTCTACGACAGCAAAGAAGCTGAAGCTGATATAAGAGACATTTATCAACAGTTTTAAGAAAATttgagaagcagcagcagctatGGACCCTAATGTCAACCGTGGTTCGCTCGAACTTGCCTGAGGACACTCCAACGTCAGCGAACCGGATGTAAAACAGTCCGAAAGAGGGAATTGCCTGCTGTTGTAATGACAGACTGCCGCCGCTAGATAGAGATAGAATACAGGAGTCAACAGGGTCTTACAATTCAAGCACAACTCAACGAAACACAATGTTCCTTCCTCTCTTCTTCTGGCAGCAGAAAATAGAGCCGTGGCTGAATGCAGAAAGACACTGCGCTGCCGGCCGACCGCGCTCATCTCCCTAATTGTCTCTTCCTCCTATATTTAACCATTTGGTTGTATTACATTTCAAGCGTCCCGCCGACCTTTGATCTCAGTTGACCAGAGAAGGCCTAATTTTAGAAACGGATGCTAAAAATGCTCTGGGAACTCGTTTGGGGGATTTTGCAGCTCTCTGGAAGTTTGTGTGAACGGCCTCGGATGTGGATAGTGGGATTCGATGGCAGTTTCTCATGAGAATGCAGCGCTGTCCCGTCGGTGGATGTTTACAGAGGGCACGTGGGGTCTTCAGAGGGGTGTGTTGAGGACGACGGCAGGTCTGCTCTCGGCACCATGCTGATACTGACAGGCTGTCCTTCCTCAGTGCTGggtttgtctgtgtttgtgatTAGATTCTGATTAGCTCTGTTTACAGTTCCTCCTGGGTTCTGCGTATATAAAACCAACAGTGCgttcgcagggtcttaaaaagtcttaaaatgtcttaaatttcaaaaacaaaatattaggccttaaaaagcattaaattcaCATAAATTTTtagtaggtcttaaataattttaaacaggtcttaatttttcttaattttaattttcttaatgatTCCAATCACTAACAATCTAtctaaatttagattttaaaaaaggtATATTTCAAAGagatgtttatttaatgtttaatttttatgttaacttaaattccctaatcaggaaaAGAAAACTAAACAATTACATAATTGCTTATGATAATAACAGCAATATATCCTTTTACATAATCTTTCATTTACACAAGAACTATTTACAGAAGAAAGTGTGAGTGGACATAATATGTATTAATAGGCATGAAacttaaggttttataacagaaacGCATTAGGTTGAATATGAGTCATACTCAATTCATTTGGACCATaagtaaacaaatacattttttggaTTATTGGTAGTTTTCTTCATGATAAGTTTAAGATTgttaaatgtataattatgttgaaaaaaggtctatacaactagagttttcttttctttgcacatttaaatatgtgattTAAGAAAGTGTAGTTATGAAATGTAGttacatttctttgttttttttctagttCCAATGGTACAACCAGGCCACTACCAAAAATCCTTAGTTTTTAGCCCCGTATAAgtctaaaatctcattcacaatggtcttaaaaagtcctatATTTGACTTAAAGAAACCGGCAAAACCCTGAATCTAGCAAGTGCTGCATAATTCAGTGGAACTAGCAGAGCAATTCCAGCTTTATGGCTGTgacttttgcagtaaaaacttctATAGAAAAATTCCCACAGAAGGTATATAacttatattgaaacatctgtttatttttccaaaaCAACTCAACACAGAGTTGTGGGATCAAAAAAATATcactctgtaaacattttttatattttaaatgagcaagATAAATGGATGTAACCAAAAGTGTTAGCGAGTTTAcaagtatacaacatactttgcagaaatactgtgaattaaactgcacaatccAAAAGAAATAAAGCTGATCAAAAGG

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0034584 piRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036035 False 768 lncRNA 0.45 7 39601856 39686034
TCONS_00036036 False 802 lncRNA 0.45 7 39601856 39686069
TCONS_00036037 False 527 lncRNA 0.46 4 39620350 39686034
TCONS_00036038 True 2001 lncRNA 0.36 3 39677521 39686127

Neighbor

gene id symbol gene type direction distance location
XLOC_018302 hey2 coding downstream 5518 39588897 ~ 39596338 (-)
XLOC_018301 pex7 coding downstream 19540 39520628 ~ 39582316 (-)
XLOC_018300 SLC35D3 coding downstream 84692 39513435 ~ 39517164 (-)
XLOC_018299 NA coding downstream 187598 39410844 ~ 39414258 (-)
XLOC_018298 NA coding downstream 196887 39404209 ~ 39404969 (-)
XLOC_018304 tpd52l1 coding upstream 5666 39691793 ~ 39735987 (-)
XLOC_018305 NA coding upstream 58068 39744195 ~ 39746437 (-)
XLOC_018306 rnf217 coding upstream 63321 39749448 ~ 39789846 (-)
XLOC_018307 nkain2 coding upstream 120243 39806370 ~ 40119872 (-)
XLOC_018308 CR847530.1 coding upstream 233105 39919232 ~ 39920174 (-)
XLOC_017928 CU539064.1 misc downstream 29548155 10053405 ~ 10053701 (-)
XLOC_018296 NA non-coding downstream 98889 39375883 ~ 39502967 (-)
XLOC_018289 BX569784.1 non-coding downstream 568920 39032821 ~ 39032936 (-)
XLOC_018288 dre-mir-124-2 non-coding downstream 696243 38905531 ~ 38905613 (-)
XLOC_018309 NA non-coding upstream 529242 40215369 ~ 40254485 (-)
XLOC_018311 NA non-coding upstream 643979 40330106 ~ 40336899 (-)
XLOC_018322 BX510919.2 non-coding upstream 1541937 41228064 ~ 41228179 (-)

Expression


Co-expression Network