XLOC_001832 (rph3aa)


Basic Information

Item Value
gene id XLOC_001832
gene name rph3aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3507861 ~ 3510876 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003649
ATGGACTCCAATGGCTATTCAGACCCGTTTGTAAAGATttgcttgAAGCCTGACATGGGAAAGAAAGCGAAGTACAAGACTCAGATCAAAAAGAAGACCCTTAACCCTGAGTTTAATGAGGAGTTCAGCTATGAAATCAAGCATGGTGAACTGGCCAAGAAGACTTTGGATGTTTCTGTCTGGGATTATGATATGGGAAAATCCAATGATTTCATCGGTGGATGCCAGCTGGGAATCACCGCCAAAGGCGAATGTTTGAAACACTGGTATGAATGTCTGAAAAACAAGGACAAGAAGATCGAGCGCTGGCATGTTCTCTTGAATCAAAGCAGCGTTGAAGCAGATGACTGA

Function

symbol description
rph3aa Predicted to enable metal ion binding activity. Predicted to act upstream of or within intracellular protein transport. Orthologous to human RPH3A (rabphilin 3A).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090706-2 Predicted to enable metal ion binding activity. Predicted to act upstream of or within intracellular protein transport. Orthologous to human RPH3A (rabphilin 3A).

Ensembl:

ensembl_id ENSDARG00000063436

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003649 True 351 mRNA 0.43 4 3507861 3510876

Neighbor

gene id symbol gene type direction distance location
XLOC_001831 ptpn11a coding upstream 52222 3428194 ~ 3455639 (+)
XLOC_001830 CU570980.1 coding upstream 98961 3408783 ~ 3408900 (+)
XLOC_001829 brap coding upstream 148672 3336772 ~ 3359189 (+)
XLOC_001828 zgc:56235 coding upstream 185523 3299829 ~ 3322338 (+)
XLOC_001827 NA coding upstream 238043 3262578 ~ 3269818 (+)
XLOC_001833 pla2g3 coding downstream 9380 3520256 ~ 3532997 (+)
XLOC_001834 NA coding downstream 346191 3857067 ~ 3857885 (+)
XLOC_001835 TTC28 coding downstream 364840 3875716 ~ 4039786 (+)
XLOC_001836 pitpnb coding downstream 535572 4046448 ~ 4085216 (+)
XLOC_001837 mn1a coding downstream 585041 4095917 ~ 4112836 (+)
XLOC_001823 NA non-coding upstream 528357 2977535 ~ 2979504 (+)
XLOC_001815 FP085363.1 non-coding upstream 819180 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 1003819 2499533 ~ 2504042 (+)
XLOC_001839 NA non-coding downstream 778829 4289705 ~ 4299850 (+)
XLOC_001840 NA non-coding downstream 804087 4314963 ~ 4318863 (+)
XLOC_001841 NA non-coding downstream 824316 4335192 ~ 4341646 (+)
XLOC_001842 dre-mir-430a-1 non-coding downstream 982401 4493277 ~ 4493358 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000168_01121464_01135373 RPH3AA coding CI01000168 null 1120757 ~ 1135373 (-)