XLOC_001834


Basic Information

Item Value
gene id XLOC_001834
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3857067 ~ 3857885 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005811
GCTGCAAATAAGAGACTGTAACAGTGATATAAAGCAGTGCCTTACTCTGAATCGCGGGGACTTTTATTATGACGCATTGCCGCGCATTGATGTGGAGTGCTTCACAGTTCGGCGCACTTCCGATTTCTCCGTGAATCAGTCATTACGTTCACTCAACGAGGAGAGAAACGAGCCGAGCGAAGTCTGGAGACTCACGGCTGTATATGATTgctgtttgttcctgttagtttATAAAACTGTGTGCGTCCAGAGGAAAAGTGAGTACTGTGCATTCTGACTGAGTTTAAGGACATTACTGGAGGACTTTGTTTAAGTTTGAGTATGCAAAGCTGACATTATGAGTGAATGCTAATAAGGCCTATATCGTGAGGGAGCTCACATTCAGTTAAACTGTTATATTACAAGTTGTTTgttatgtagtcaaatattatgttcatTTATCTTAAATACTGCCTTATGTTCACATTTGGGGATGCCAGTAGTTCATGTAATTATGTCACATGTATGTATTGTGATTTATCTGTATTGTGGAAGGAGTAATAAGCACACATTAACAAATATGttctttattctgtttgtttacagaccacacacacacacacacaaacaccacacacGGCTCTACAAGTTCATACATGCATAGATGTATGCAAAGTTGGATCTATGCCGTCTTAAGGAAGATTTAAGCACAAGGCAATACAATCATCATCATCCAGTATCCATGCCCATTCCATGTATGTGGTTAGAAGACGTTAACATACAAGTTACAACTGGCTCCCCCTCTGCATATGACTGTAATCAATAAATCATTCAAGTATA

Function

GO:

id name namespace
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005811 True 819 lncRNA 0.39 1 3857067 3857885

Neighbor

gene id symbol gene type direction distance location
XLOC_001833 pla2g3 coding upstream 324070 3520256 ~ 3532997 (+)
XLOC_001832 rph3aa coding upstream 346191 3507861 ~ 3510876 (+)
XLOC_001831 ptpn11a coding upstream 401428 3428194 ~ 3455639 (+)
XLOC_001830 CU570980.1 coding upstream 448167 3408783 ~ 3408900 (+)
XLOC_001829 brap coding upstream 497878 3336772 ~ 3359189 (+)
XLOC_001835 TTC28 coding downstream 17831 3875716 ~ 4039786 (+)
XLOC_001836 pitpnb coding downstream 188563 4046448 ~ 4085216 (+)
XLOC_001837 mn1a coding downstream 238032 4095917 ~ 4112836 (+)
XLOC_001838 plppr1 coding downstream 378113 4235998 ~ 4259274 (+)
XLOC_001839 NA coding downstream 431820 4289705 ~ 4299850 (+)
XLOC_001827 NA non-coding upstream 587249 3262578 ~ 3269818 (+)
XLOC_001823 NA non-coding upstream 877563 2977535 ~ 2979504 (+)
XLOC_001815 FP085363.1 non-coding upstream 1168386 2688565 ~ 2688681 (+)
XLOC_001807 NA non-coding upstream 1353025 2499533 ~ 2504042 (+)
XLOC_001840 NA non-coding downstream 457078 4314963 ~ 4318863 (+)
XLOC_001841 NA non-coding downstream 477307 4335192 ~ 4341646 (+)
XLOC_001842 dre-mir-430a-1 non-coding downstream 635392 4493277 ~ 4493358 (+)
XLOC_001845 NA non-coding downstream 951998 4809883 ~ 4810251 (+)

Expression


Co-expression Network