XLOC_018341 (snx9b)


Basic Information

Item Value
gene id XLOC_018341
gene name snx9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43016437 ~ 43079481 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036095
GTGTCTCTTATGTGAAGCACACACTCAGCTGCAGTCAAGTTTAGCAGCTCAAGTCTGCTGAAAACGACGAGTTTGGATTTACACAAGTTAATAAGGCCCTACATTTGATTCTCTGTGtgtaaaaaaagaagataaaGTGTATTAGGCGATGTAAACAAACTAACGTTAGTCCGAAAAGAATCGATTCTGGCAAAAGCGACATGTCTGGATGAAGAAGAGAGAGAGTTTATCGCCAATAAACTGCAGGTTTCTGTAATGACTGGTTAATGTGTGTACAATGGAGTCGAAGgCACAGGTTTTATATGATTTCGCGGCAGAGCCTGGGAATAATGAGTTGTCGGTTCGAGAGGGTGAGACAATCACAATAACCAATCAGAACATTGGTGGAGGATGGATTGAGGCAAGAAACTCCAGAGGAGAAGTCGGATTGGTACCAGAGGACTATATAGAGATTAACCAGGCTCAGCCTTTAACCTCTGGAGGAAATGCAGCCCCCCTCGATCTCTCATTTTTTGACAGTCACGTGCCGACCCCGGCCAGCACCGCACAGACGAGTAACGGCAATGACCCGTGGGCAGTGTTTGACAATAATGCCTCTGGGGGGTTTTCTAATAACTGGGCAGCTCAGCCAGAGGGCACAGAGACGGGGAAAACCAGTAACAACAATGCATGGCAATCTGGGGGACACGGGCATCCACAGGCCTACCAGGGTCCAGgTGCAGAAGATGATGAGTGGGACGAGGAGTGGGATGACATGAAGTCATCAGGCGGCTATGCTGAGTCTGAGGCCGGAGAGGGTGGGGCTATGAATAGAGGCGGAGCTCACGGTTCATCCATGAAAATTGCCCTTAACAAGTTTCCAGGCTTCTCTAAATCCGGCCCTGAATTGTACCTGCTGTCCAAGCAGCAAACCAAAGGAAACAAGTTGTCTGTTTATAGCGGGGAAGTCGGTCCAGTTTGGGCGTATCCAGACTACCAACTAGACTGTGTTGTCGCTGATCCTAAAAAGGGCTCCAAAATGTATGGCCTCAAGAGTTACATTGAATACCAAGTCATCCCCACCACCACAAACAAGCCTGTCAATCACAGATACAAGCACTTCGATTGGTTATATGAAAGACTTTTGGATAAATTTGGGTCAGCGATTCCAATTCCCTGCCTGCCTGATAAACAGGTGACAGGTCGATTTGAGGAAGAGTTTATAAAAATGCGAATGGAGAGGCTTCAGGGTTGGATGTCTCGAATGTGCCGGCATCCGGTGGTCTCCAGCAGTGAAGTCTTCCAGCTTTTTCTGTCCTACAAAGATGAAAAGGACTGGAAAACTGGTAAGAGAAAAGCAGAAAAAGACGAGACCGTCGGAGTCATGATTTTCTCAACAATAGAGCCTGAAGGACTGCCAGACATGGACCTGATTGAAGTAGAGCAGAAATGTGAGCAGTTCAGCCGCTTCACCAAGGCAATGGACGACGGTGTGAAAGACTTGCTGACTGTAGGAAATGAACATTGGAAGCGCTGCACAGGCCCACTTCCCAAAGAATATCAGCGAATTGGCAAAGCTTTCCAGAACCTTTCCTCAGTGTTCACCACAAGTGGATATGAAGGAGAAGGAACACTCACCGATGCAATGACTGCTGCAGGAAAAACCTATGAAGAGATCGCTCAGATGGTTGCAGAGCAGCCAAAGAAAGACCTTCATTTCCTGATGGAAACTAACAATGAGTACAAAGGTCTGCTGGGATGCTTTCCTGACACTATTGGAGTTCACAAGGCTGCTATAGAAAAGGTAAAGGAAGCAGATAAACTTGTGACCGCTGGTAAAATCACCGCCTCAGACAAGACCACCATGGGCAAACGTGCCAGCACCATGTCATACGCTCTACAAGCCGAAATGAACCACTTCCACAACAATCGCATCTATGACTACAACAGAGTGATGCAGCAGTATCTGGAGCAGCAAGTCAAATTCTACGAGATGATTGCAGAGAAGCTGCGGCAAGCTCACAGTCAGTTCACTACTATGTAATGCTGAATCGTCCGCCCAGAAGCTGCCTCATTTCTCTCTTCCTCTTACATGATTATTCACTCTTTCTATTCCTGTTATCTGTGTCATGATGTCAGTGCCATACAAATGCCAGGCCAAAGATAATCCAGCGCCCTGTGTGCAGACTGGCCCACCTCcggtgttttaaaaacaaaaagcagcTACAGATTGTctaaaaacaagaaataaatcTGATTATAAGAGGGCTATAATTATTCTAATCCTCAAGGTGTTGATTTCGATGATCCACATCTGTTATTAAGACCCTCACTGATGTAGAACTTTTATATAATGATCTAAACGTATAGCGGATTGTTTGAACTCATTGGCCAACCGAGTTTCATCGTGCCTTCTTTTGTGTAGAGCCGGCAAAACaacaacatgctttttttttatccTGTGCACTTTACTGTGGCCTTTCAGATGCATCATTCTGTTTGTGTTTGGCAACCGCAGTGTCCTTCATCAGAGGATTTTGCGGATGAAACAGGAGGGCTGGTCCTTTTTCCCCACAGAAGAGACATTCAGATGTTATTTTTCTCGCTCCCCAAAGCCAGATTACAGACATGCTTCCACCTCAGTGCAATTATCAGCAATTTCCTATCCTGTAAAAGTGAATTATACGTATAGATGCATGTTTTCCAGTTGTtcgtatatatattttttatgtaaagcaGTGTTTGCAAGTCTTTTGCACACAGAATGACAAATAAGATTGAgattatgatttaataaatactgATTTGTATACCATGCAA
>TCONS_00036096
GTTGTGTCTCTTATGTGAAGCACACACTCAGCTGCAGTCAAGTTTAGCAGCTCAAGTCTGCTGAAAACGACGAGTTTGGATTTACACAAGTTAATAAGGCCCTACATTTGATTCTCTGTGtgtaaaaaaagaagataaaGTGTATTAGGCGATGTAAACAAACTAACGTTAGTCCGAAAAGAATCGATTCTGGCAAAAGCGACATGTCTGGATGAAGAAGAGAGAGAGTTTATCGCCAATAAACTGCAGGTTTCTGTAATGACTGGTTAATGTGTGTACAATGGAGTCGAAGgCACAGGTTTTATATGATTTCGCGGCAGAGCCTGGGAATAATGAGTTGTCGGTTCGAGAGGGTGAGACAATCACAATAACCAATCAGAACATTGGTGGAGGATGGATTGAGGCAAGAAACTCCAGAGGAGAAGTCGGATTGGTACCAGAGGACTATATAGAGATTAACCAGGCTCAGCCTTTAACCTCTGGAGGAAATGCAGCCCCCCTCGATCTCTCATTTTTTGACAGTCACGTGCCGACCCCGGCCAGCACCGCACAGGTGGATGTAGCTCAACCGGAAAGCCCAGTTACCCCAGTCACCCCAGTTACCCCAGGCTTCACCTCCACCTCACCTGATGAGACGAGTAACGGCAATGACCCGTGGGCAGTGTTTGACAATAATGCCTCTGGGGGGTTTTCTAATAACTGGGCAGCTCAGCCAGAGGGCACAGAGACGGGGAAAACCAGTAACAACAATGCATGGCAATCTGGGGGACACGGGCATCCACAGGCCTACCAGGGTCCAGgTGCAGAAGATGATGAGTGGGACGAGGAGTGGGATGACATGAAGTCATCAGGCGGCTATGCTGAGTCTGAGGCCGGAGAGGGTGGGGCTATGAATAGAGGCGGAGCTCACGGTTCATCCATGAAAATTGCCCTTAACAAGTTTCCAGGCTTCTCTAAATCCGGCCCTGAATTGTACCTGCTGTCCAAGCAGCAAACCAAAGGAAACAAGTTGTCTGTTTATGTACCTACCCTACCACCctaaaggcagaggaagatgctaaccatctcacaaaaagttggacttctggacatgctaaaggaagAGCGGGGAAGTCGGTCCAGTTTGGGCGTATCCAGACTACCAACTAGACTGTGTTGTCGCTGATCCTAAAAAGGGCTCCAAAATGTATGGCCTCAAGAGTTACATTGAATACCAAGTCATCCCCACCACCACAAACAAGCCTGTCAATCACAGATACAAGCACTTCGATTGGTTATATGAAAGACTTTTGGATAAATTTGGGTCAGCGATTCCAATTCCCTGCCTGCCTGATAAACAGGTGACAGGTCGATTTGAGGAAGAGTTTATAAAAATGCGAATGGAGAGGCTTCAGGGTTGGATGTCTCGAATGTGCCGGCATCCGGTGGTCTCCAGCAGTGAAGTCTTCCAGCTTTTTCTGTCCTACAAAGATGAAAAGGACTGGAAAACTGGTAAGAGAAAAGCAGAAAAAGACGAGACCGTCGGAGTCATGATTTTCTCAACAATAGAGCCTGAAGGACTGCCAGACATGGACCTGATTGAAGTAGAGCAGAAATGTGAGCAGTTCAGCCGCTTCACCAAGGCAATGGACGACGGTGTGAAAGACTTGCTGACTGTAGGAAATGAACATTGGAAGCGCTGCACAGGCCCACTTCCCAAAGAATATCAGCGAATTGGCAAAGCTTTCCAGAACCTTTCCTCAGTGTTCACCACAAGTGGATATGAAGGAGAAGGAACACTCACCGATGCAATGACTGCTGCAGGAAAAACCTATGAAGAGATCGCTCAGATGGTTGCAGAGCAGCCAAAGAAAGACCTTCATTTCCTGATGGAAACTAACAATGAGTACAAAGGTCTGCTGGGATGCTTTCCTGACACTATTGGAGTTCACAAGGCTGCTATAGAAAAGGTAAAGGAAGCAGATAAACTTGTGACCGCTGGTAAAATCACCGCCTCAGACAAGACCACCATGGGCAAACGTGCCAGCACCATGTCATACGCTCTACAAGCCGAAATGAACCACTTCCACAACAATCGCATCTATGACTACAACAGAGTGATGCAGCAGTATCTGGAGCAGCAAGTCAAATTCTACGAGATGATTGCAGAGAAGCTGCGGCAAGCTCACAGTCAGTTCACTACTATGTAATGCTGAATCGTCCGCCCAGAAGCTGCCTCATTTCTCTCTTCCTCTTACATGATTATTCACTCTTTCTATTCCTGTTATCTGTGTCATGATGTCAGTGCCATACAAATGCCAGGCCAAAGATAATCCAGCGCCCTGTGTGCAGACTGGCCCACCTCcggtgttttaaaaacaaaaagcagcTACAGATTGTctaaaaacaagaaataaatcTGATTATAAGAGGGCTATAATTATTCTAATCCTCAAGGTGTTGATTTCGATGATCCACATCTGTTATTAAGACCCTCACTGATGTAGAACTTTTATATAATGATCTAAACGTATAGCGGATTGTTTGAACTCATTGGCCAACCGAGTTTCATCGTGCCTTCTTTTGTGTAGAGCCGGCAAAACaacaacatgctttttttttatccTGTGCACTTTACTGTGGCCTTTCAGATGCATCATTCTGTTTGTGTTTGGCAACCGCAGTGTCCTTCATCAGAGGATTTTGCGGATGAAACAGGAGGGCTGGTCCTTTTTCCCCACAGAAGAGACATTCAGATGTTATTTTTCTCGCTCCCCAAAGCCAGATTACAGACATGCTTCCACCTCAGTGCAATTATCAGCAATTTCCTATCCTGTAAAAGTGAATTATACGTATAGATGCATGTTTTCCAGTTGTtcgtatatatattttttatgtaaagcaGTGTTTGCAAGTCTTTTGCACACAGAATGACAAATAAGATTGAgattatgatttaataaatactgATTTGTATACCATGCAA
>TCONS_00036097
CAGACATGGACCTGATTGAAGTAGAGCAGAAATGTGAGCAGTTCAGCCGCTTCACCAAGGCAATGGACGACGGTGTGAAAGACTTGCTGACTGTAGGAAATGAACATTGGAAGCGCTGCACAGGCCGTGAGTATTATTTGAGGCACTGAAGGTTATGGCGGTTATGGTTTAGGTGCACTAAAGTTTAACCTTACATAGCATTGTTTTTGATAtaatgacagtgcataatattgtACTAGTTATTATGTAGGATATtagtattaagcttaaagtgcaatttagacctaactcggttaattaggttagttTAGGGGGGGAAAAAATGGaaagttattggacaacagtggtttgttctgggctagtaataatgaccttaaaaattactctta
>TCONS_00036098
TTGTATTTTAGAGCGGGGAAGTCGGTCCAGTTTGGGCGTATCCAGACTACCAACTAGACTGTGTTGTCGCTGATCCTAAAAAGGGCTCCAAAATGTATGGCCTCAAGAGTTACATTGAATACCAAGTCATCCCCACCACCACAAACAAGCCTGTCAATCACAGATACAAGCACTTCGATTGGTTATATGAAAGACTTTTGGATAAATTTGGGTCAGCGATTCCAATTCCCTGCCTGCCTGATAAACAGGTGACAGGTCGATTTGAGGAAGAGTTTATAAAAATGCGAATGGAGAGGCTTCAGGGTTGGATGTCTCGAATGTGCCGGCATCCGGTGGTCTCCAGCAGTGAAGTCTTCCAGCTTTTTCTGTCCTACAAAGATGAAAAGGTAGAGTATTCCAGTACTACATATAAACTAGGGCTGCACTAAATCAGAAAAAATCTTGATATTTTGGTATTCAGCGACATATATTGCGATAAGAATACAATggatgac

Function

symbol description
snx9b Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX9 (sorting nexin 9).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0015031 protein transport biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-50 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Orthologous to human SNX9 (sorting nexin 9).

Ensembl:

ensembl_id ENSDARG00000069302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036095 False 2799 mRNA 0.45 18 43016437 43079478
TCONS_00036096 False 2965 nonsense_mediated_decay 0.45 20 43016437 43079481
TCONS_00036097 False 389 lncRNA 0.39 2 43036516 43037072
TCONS_00036098 True 494 lncRNA 0.43 3 43039061 43041305

Neighbor

gene id symbol gene type direction distance location
XLOC_018340 pomcb coding downstream 43838 42968785 ~ 42972599 (-)
XLOC_018339 AL845420.2 coding downstream 49049 42967274 ~ 42967388 (-)
XLOC_018338 NA coding downstream 164107 42849227 ~ 42852330 (-)
XLOC_018337 NA coding downstream 197324 42806763 ~ 42819113 (-)
XLOC_018336 NA coding downstream 215012 42793559 ~ 42801425 (-)
XLOC_018342 AL845420.1 coding upstream 3468 43082949 ~ 43083067 (-)
XLOC_018343 afdna coding upstream 40651 43120132 ~ 43389320 (-)
XLOC_018344 NA coding upstream 318242 43397723 ~ 43411607 (-)
XLOC_018345 AL928920.1 coding upstream 327226 43406707 ~ 43407505 (-)
XLOC_018346 pimr109 coding upstream 352611 43432092 ~ 43436896 (-)
XLOC_017928 CU539064.1 misc downstream 32962736 10053405 ~ 10053701 (-)
XLOC_018335 NA non-coding downstream 255773 42757575 ~ 42760664 (-)
XLOC_018360 NA non-coding upstream 1013422 44092903 ~ 44095025 (-)
XLOC_018361 NA non-coding upstream 1044322 44123803 ~ 44275988 (-)

Expression


Co-expression Network