XLOC_018344


Basic Information

Item Value
gene id XLOC_018344
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43397723 ~ 43411607 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036951
GACCTGAAACAGTGTTGTTGACCTTCCTTTCTTTCAGAAATAGAGCTCGAGTACGGATGCAGAGGAAATATACATGGAGAATGTGATGCGACTGAGAGAAGAACAACCTACAAACTCAAGCGTATGGAGAACATCAGAAACTGGACACATATACCACATCCACAGCAGACATCTTTCTTCAGTGATTTTATTTTCAGAGGAAatgcagCGCCCTTTGTCTGACAGGTTGCCCCTTGAGCGACGTCATCTTTACAGCCGGGCTCAgcagagaccacatttggagggTCGTCATGACTACAGCCAGGCTCAgcagagaccacatttggagggGGGTCATCACCGCAGCCGGACTCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCAGAGAAGAAGCTGCTGTAGGAGCTGGCTGTGAGCTCAATACTACAGTTGAATCCGGCTGAGTAAATCTCTTGAGGAACATTATCACTACTTCTGGAGGAGCTGGCCGAGTCCTCACTGTGACCATCGACAGACTCTACCAGTGATtgttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggatcttcaccgtgaacactgtcagactctaccagtgatggttcttTACTCTGACCATCAACAGGTTCCTCCAGTGATGGTTCCTCAGTCTGAACATTGATCTGTTCCTCCAGATGAAAAGATAATTCTTCACACCAGTCACCGATTTCTTGACCTGAAGGAAGGAATAATGTGAAACAAAAGATTTTAgttttacttaaataatatttatccagagtttattatttatataaacaaattggTCATTAAATTAAAGAGGTCACACAATGAAATTACTGTTCATAATCAAATTCACtttaattaatgatttgttttgtataaaTTCATGTCAATATGAACTTATAGCTGTTATAGTTTGTatcatataacaataaataaaataaccctaAGCTTggcaaaaacaactaaaaactatGAGAAAAGTTTTCATGTTTTCCACTACAAAaaccattaaaacattaaatatcagCAATTGTTATCCATTAAAACCACTGCATTGTGTTTTAGGACATATTCCTGAAGGATTTAATGGTTTAGGATTACAAATTACAAGCAGAGACAAGGGATCAAACAGGGGTGTCGAACTAAAATCACTAAAATTTTGtgggttttaatattttatttgttgatttttgtatggcag
>TCONS_00036104
TTCACAGTTCCTCACGGCTGCTGGTACATCATCCTGGTCCACTTTTTCAACTTGACCTGAAACAGTGTTGTTGACCTTCCTTTCTTTCAGAAATAGAGCTCGAGTACGGATGCAGAGGAAATATACATGGAGAATGTGATGCGACTGAGAGAAGAACAACCTACAACAGACTCAAGCGTATGGAGAACATCAGAAACTGGACACATATACCACATCCACAGCAGACATCTTTCTTCAGTGATTTTATTTTCAGAGGAAatgcagCTCAGCACCACCTTTAAGATGGGCAGTTTCCAGTGGCACCACGTGGAGGAACGGACATCGCCACCTATATATACAGGGTTGCCCCTTGAGCGACGTCATCTTTACAGCCGGGCTCAgcagagaccacatttggagggTCGTCATGACTACAGCCAGGCTCAgcagagaccacatttggagggGGGTCATCACCGCAGCCGGACTCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCAGAGAAGAAGCTGCTGTAGGAGCTGGCTGTGAGCTCAATACTACAGTTGAATCCGGCTGAGTAAATCTCTTGAGGAACATTATCACTACTTCTGGAGGAGCTGGCCGAGTCCTCACTGTGACCATCGACAGACTCTACCAGTGATtgttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggatcttcaccgtgaacactgtcagactctaccagtgatggttcttTACTCTGACCATCAACAGGTTCCTCCAGTGATGGTTCCTCAGTCTGAACATTGATCTGTTCCTCCAGATGAAAAGATAATTCTTCACACCAGTCACCGATTTCTTGACCTGAAGGAAGGAATAATGTGAAACAAAAGATTTTAgttttacttaaataatatttatccagagtttattatttatataaacaaattggTCATTAAATTAAAGAGGTCACACAATGAAATTACTGTTCATAATCAAATTCACtttaattaatgatttgttttgtataaaTTCATGTCAATATGAACTTATAGCTGTTATAGTTTGTatcatataacaataaataaaataaccctaAGCTTggcaaaaacaactaaaaactatGAGAAAAGTTTTCATGTTTTCCACTACAAAaaccattaaaacattaaatatcagCAATTGTTATCCATTAAAACCACTGCATTGTGTTTTAGGACATATTCCTGAAGGATTTAATGGTTTAGGATTACAAATTACAAGCAGAGACAAGGGATCAAACAGGGGTGTCGAACTAAAATCACTAAAATTTTGtgggttttaatattttatttgttgatttttgtatggcag
>TCONS_00036952
GTCCGTCATGGATTTGGGTCcgcttgaaacatttccgttttGTTGCGTGGATAATATTTGCCAATGATATTTGCAAGTTGTGGCCAACTTAGTTCCTCACGGCTGCTGGTACATCATCCTGGTCCACTTTTTCAACTTGACCTGAAACAGTGTTGTTGACCTTCCTTTCTTTCAGAAATAGAGCTCGAGTACGGATGCAGAGGAAATATACATGGAGAATGTGATGCGACTGAGAGAAGAACAACCTACAACAGACTCAAGCGTATGGAGAACATCAGAAACTGGACACATATACCACATCCACAGCAGACATCTTTCTTCAGTGATTTTATTTTCAGAGGAAatgcagCGCCCTTTGTCTGACAGGTTGCCCCTTGAGCGACGTCATCTTTACAGCCGGGCTCAgcagagaccacatttggagggTCGTCATGACTACAGCCAGGCTCAgcagagaccacatttggagggGGGTCATCACCGCAGCCGGACTCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCAGAGAAGAAGCTGCTGTAGGAGCTGGCTGTGAGCTCAATACTACAGTTGAATCCGGCTGAGTAAATCTCTTGAGGAACATTATCACTACTTCTGGAGGAGCTGGCCGAGTCCTCACTGTGACCATCGACAGACTCTACCAGTGATtgttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggatcttcaccgtgaacactgtcagactctaccagtgatggttcttTACTCTGACCATCAACAGGTTCCTCCAGTGATGGTTCCTCAGTCTGAACATTGATCTGTTCCTCCAGATGAAAAGATAATTCTTCACACCAGTCACCGATTTCTTGACCTGAAGGAAGGAATAATGTGAAACAAAAGATTTTAgttttacttaaataatatttatccagagtttattatttatataaacaaattggTCATTAAATTAAAGAGGTCACACAATGAAATTACTGTTCATAATCAAATTCACtttaattaatgatttgttttgtataaaTTCATGTCAATATGAACTTATAGCTGTTATAGTTTGTatcatataacaataaataaaataaccctaAGCTTggcaaaaacaactaaaaactatGAGAAAAGTTTTCATGTTTTCCACTACAAAaaccattaaaacattaaatatcagCAATTGTTATCCATTAAAACCACTGCATTGTGTTTTAGGACATATTCCTGAAGGATTTAATGGTTTAGGATTACAAATTACAAGCAGAGACAAGGGATCAAACAGGGGTGTCGAACTAAAATCACTAAAATTTTGtgggttttaatattttatttgttgatttttgtatggcag
>TCONS_00036953
GTGATTTTATTTTCAGAGGAAatgcagGAAGCTTAATTAGAGCCagtgtaaatgttaaaataagagCTATGACACTGCAGAACCAAATTATGTTCAGCTTTCTGTGGATAAAGTTATGTTTAGCTAAAGGACTATGGTGGTGGGGTTTAAAATGGCTAGATCCACCCATTAAATGAGGACATTTCTCCTCAGTTCTAATCCTCTTCCTTGTTCTCCTCCTGAAACAAAAACAGTGATCAGGTTTACAGCATTATTGCATTAGACAaacaacatataattaaaagaaaagcaataaagtatttttaaataaattcaattaaaaaaaaaaaagaaaatttaagagCACAGGACTGTCGTCTAAcactagctgggtttccatcagccTGTGTTGATGCACCTTTTCAAGTATCACATGAGAAACACGTTTAAATAAGAATCCCttaatttacaaaatgttttatacTCACTTGAGGTCATTTTGGATTTGTGTGAAAAAGGGTTCATGATGGAAATGCATTTGTCAATTGAACTTTGATTTCTCAATTAAACTccccttgtttactgttggttacgaggttaccaatactacattTCAGCTGCTCGACCAACTTGATGGAAATCATTTGCTCATAATTCacatttataattacaaaatatatatttagtgaaCTTTGAAAAGATGTGCTTCACATTATAATGGAAACTCAGCTCATGACAGAATCATTTGACTGATGACAAAATCCTTTAAAGTCTTTACATTACCTTAAACCAGGCATGGTCAAGGAGTGCATGCAACTTGGGTCGAAAAGGGTAGTTAATTTCCAGACAACTGCAGAGGAAATCATTGCATTCtatgcaaaaaaaagaaagagatacATGTTATTATTGCCTTGAAGTTTAAACATGCTTTTTTCATTGACATTCAAAATGTTCTACACAACCATCTTTAGCTGAAGTGAGGATCTCACCTTTTGACCATCCATCATGCTTTGCATGTCCAGAATTCAACCTGAAGAGGTCACGGTTTTCTGGGAAATTGTTGAATATTAGCAAATACTGAAGAATCCCGAGTGTCCACACTGTCGCTGGCTCAGCATCGTATGTGTTAACACCTTTAAACTCGGGAGGGCAGTACTGTGGTGTGCCTGAAAGAAAGAGATTTTGTTTCCATTAGCACAACATTTAAATTTccatgcaaaaatgtaaacaataatataGATCAGGGTTGCTCAAACGCAGTCCAGGAGGATCTGTGTCCTGCAGTTTAGCTCCAGCCCCacttagacacacctgaacaagctaatcaagctcttactaagtaCACTAGACATTTTCtgtcaggtgtgttgaagcaaagtggagctaaactctgtaggCCACCGGCCCTCTAGCACTGAGCTTTGACACCCATGGTATAGATAAACAACAGTGAATGTTTCAAGAGTCTTATGTGAATGACCCTTGAATGATCAGCTCCTTATAGCTTTGAGGGATTTACTTACCCCAAAACTCTGTGTAACCGTTCTCATTAAAGAGGGCACCGCACCCGAAGTCAGTCAGTTTGACTTCTAAGGTCTCTGGGTTAATCAGCAAGTTCTCCAGCTTGATATCGCGGTGAAACACTCCACGTTTGAGGCATGTGTCAGCTGCAATTGTTGCCTGGAACATGATTTTCCGTAACACGTCCTCTGCAACAATGCCTTTGTGGTCTTCTAAAAAATTACTTAAGTCCACACAGGGTATGAGCCGCTCTAGGACCATGAAGTAGCAATCAGCTTCCACCTTCCAGTCCAGAAGATCAACAATTTGTTTAACCTTGGGGCCTTTAGTAGCAAGATAGTGCAGAGCGATCTCCTCTGGAAGTAGTCTGTCAAACCCATCCTAGAAGAAAGACAGTTGTTAGGATCATTTGATGGAAAAGTTATTTCCTGTTAAAACTGTTGGTGACGTCTAACATAAAAACCAGTGGGCAGATTATAGagagcaaaacaaagacagacacattttcaaaggagaataactgacacttagcatgtttctaaaatatctgcaaacatattatggtatttttgtgctctaaaagagtcaaaaacttacatacagcaccctTAATATGACATGTTTAAAATAGAAACAGTTAATCAGAGCAAAGAGCACAGACTACTTACAACACGGATGTATCGCCTGTCCTTGAAATCTGCAATTTTTACTGCCACTTGAAGACCATCTTGTAAACGGGTCGCTGCGAAAACGGTTCCATAGCCTCCTTTGCCCAGCTCAGCCCCGATTTCATAAGACTTTGAGTTGATCTCTGTGAAAAGAGAAAGAAGAGAAGTTAATCAAATGTGAGAATTAgtgacagtggaatgaaccaacatcATATAAAACCTTTTTGAATCTTGTCTTCCCTATATGTATGATTatgg

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036951 False 1390 lncRNA 0.41 4 43397723 43410305
TCONS_00036104 False 1506 lncRNA 0.42 5 43397723 43410358
TCONS_00036952 False 1531 lncRNA 0.41 5 43397723 43411607
TCONS_00036953 True 2426 lncRNA 0.38 2 43399129 43404682

Neighbor

gene id symbol gene type direction distance location
XLOC_018343 afdna coding downstream 8403 43120132 ~ 43389320 (-)
XLOC_018342 AL845420.1 coding downstream 314656 43082949 ~ 43083067 (-)
XLOC_018341 snx9b coding downstream 318242 43016437 ~ 43079481 (-)
XLOC_018340 pomcb coding downstream 425124 42968785 ~ 42972599 (-)
XLOC_018339 AL845420.2 coding downstream 430335 42967274 ~ 42967388 (-)
XLOC_018346 pimr109 coding upstream 20485 43432092 ~ 43436896 (-)
XLOC_018347 pimr133 coding upstream 45818 43457425 ~ 43462190 (-)
XLOC_018348 pimr132 coding upstream 79919 43491526 ~ 43495506 (-)
XLOC_018349 pimr134 coding upstream 116283 43527890 ~ 43533096 (-)
XLOC_018350 pimr125 coding upstream 156153 43567760 ~ 43572763 (-)
XLOC_017928 CU539064.1 misc downstream 33344022 10053405 ~ 10053701 (-)
XLOC_018338 NA non-coding downstream 545393 42849227 ~ 42852330 (-)
XLOC_018337 NA non-coding downstream 578610 42806763 ~ 42819113 (-)
XLOC_018336 NA non-coding downstream 596298 42793559 ~ 42801425 (-)
XLOC_018360 NA non-coding upstream 681296 44092903 ~ 44095025 (-)
XLOC_018361 NA non-coding upstream 712196 44123803 ~ 44275988 (-)
XLOC_018362 NA non-coding upstream 934380 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 non-coding upstream 937335 44348942 ~ 44349057 (-)
XLOC_018365 NA non-coding upstream 1052738 44464345 ~ 44496245 (-)

Expression


Co-expression Network