XLOC_018355 (ttc32)


Basic Information

Item Value
gene id XLOC_018355
gene name ttc32
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43746523 ~ 43750771 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036120
AACGCTGCAACTTCATCACGAAcgaattaatattcatgaggtgGCTAGTGCAAGCAAGAGCAGCGTTACATGGAGAACAGCGAGCTAAAGATCCTACAAAAAGCGCATGAAGAGTTTAACAGTAAGAATTATAAACGAGCAGAGGAATTATACACACAGTTCATCGAGTCCTGTACCAAATCCAGAGACTGTAATGGTCAAGATTTGGCCATCGCCTATAATAATCGAGGACAGGTGAAGTATCTCCGGGTGGATTTCTATGAAGCCATGGATGATTACACCTCTGCCATTCACATCAACAGACAGTTTGAAGTGCCACTTTATAACAGAGGATTGATACGTTACAGATTGGGCTTTTTCAAGGAGGCTGAAGGAGACTTTCGCAGAGTCCTGGAACTGAATCCTGATTTCAAAGATGCTAAAGAAAGTTTGAATCAGACACTTCTGGACAGAGAAGAAAAGGTGAAGAGAGGCTACTGAGAGCTTGTTTCTGAATTTTGACTGTTGATTGAACCTATGCTATGATTGAACCAACTCTGTGAGCATGTGATTGTGTATTTGTAAGTTTCATTCACACGTCTCCAAAACTTGCAGGTTTCAATACTCTTCTGATTAAAATGCATAAGTGTGCATTTCACCTTTGATTAATTGTTGATTTTAAATTGCATGTCGACTTGatatttaaaaatggaaataGTTTCCCTtgcattgttttaatttaatgtacaGAAACAACAGTGTTAAAGTTATTGAAATGGACTCATGAAcatgaataaaaatgcatttttattatttaatacatca

Function

symbol description
ttc32 Orthologous to human TTC32 (tetratricopeptide repeat domain 32).

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041014-158 Orthologous to human TTC32 (tetratricopeptide repeat domain 32).

Ensembl:

ensembl_id ENSDARG00000069241

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036120 True 804 mRNA 0.37 3 43746523 43750771

Neighbor

gene id symbol gene type direction distance location
XLOC_018354 zpax1 coding downstream 2823 43737022 ~ 43743700 (-)
XLOC_018353 mixl1 coding downstream 22663 43715157 ~ 43723860 (-)
XLOC_018352 BX470188.1 coding downstream 83029 43658361 ~ 43663494 (-)
XLOC_018351 pimr124 coding downstream 143873 43597003 ~ 43602650 (-)
XLOC_018350 pimr125 coding downstream 173760 43567760 ~ 43572763 (-)
XLOC_018356 matn3a coding upstream 9288 43760059 ~ 43775544 (-)
XLOC_018357 laptm4a coding upstream 25022 43775793 ~ 43786515 (-)
XLOC_018358 mark3b coding upstream 42095 43792866 ~ 43917689 (-)
XLOC_018359 runx2b coding upstream 244077 43994848 ~ 44090660 (-)
XLOC_018360 NA coding upstream 342132 44092903 ~ 44095025 (-)
XLOC_017928 CU539064.1 misc downstream 33692822 10053405 ~ 10053701 (-)
XLOC_018344 NA non-coding downstream 334916 43397723 ~ 43411607 (-)
XLOC_018345 AL928920.1 non-coding downstream 339018 43406707 ~ 43407505 (-)
XLOC_018342 AL845420.1 non-coding downstream 663456 43082949 ~ 43083067 (-)
XLOC_018339 AL845420.2 non-coding downstream 779135 42967274 ~ 42967388 (-)
XLOC_018338 NA non-coding downstream 894193 42849227 ~ 42852330 (-)
XLOC_018361 NA non-coding upstream 373032 44123803 ~ 44275988 (-)
XLOC_018362 NA non-coding upstream 595216 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 non-coding upstream 598171 44348942 ~ 44349057 (-)
XLOC_018365 NA non-coding upstream 713574 44464345 ~ 44496245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_04122433_04123725 TTC32 coding CI01000029 null 4122208 ~ 4123725 (-)