XLOC_018358 (mark3b)


Basic Information

Item Value
gene id XLOC_018358
gene name mark3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43792866 ~ 43917689 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036128
TCGGGATgggaggaatttaatcaacctgGAGTGATTTAGAGCAGATCGTCTGGAGCACATGAACGAGACCGCGCATTCAGAAAGCCTATATTAAGACCCAGAACCGGTTTGAAGCGGACGCCCCCTCCCCTTTTTTCCTTGTCTGAACGCTGTGTGCAGTTTCTGAGGGGGCCTGGGAATTGTTTGTGCTTGAGTTTTACAATAGGCACTTCTCGCAAAGTTTTTTAAAGTAATCCAGGACGATGGTTTGGTTATGACCTGTCGGTTGCCAGGTCTTTTGCGGAGAGTTGCTGCTTTGTGTCGCCGGTGACCTGTTGTGTGCCGTTATGCGTCTGGATACGTTATTGCATTAATCTTGGATCTGTTACTCGTGCTGGAATCTGGTTTGGATGTCGATCCACTCCATGGTCTTCATCAGCTGGTGTCCGGCAGCTGTCCACCCTGCGAACTAAAGGTTGCTGTGATCAGACTCGGGTCCACTTTGGAGATAAAGACACATTAAAATGTCAACTAGAACACCACTACCTACTGTCAATGAGAGAGATACAGAAAACCACACATCACACACAGATGGGCGTAATGAAGTGGCATCTCGTCCTGGGCGGTCGGGCGCTCGCTGTCGAAACTCCATTGCCTCTTGTGCCGATGAGCAGCCACATATCGGCAACTACCGGCTCCTCAAAACCATCGGCAAGGGCAACTTTGCCAAGGTCAAATTGGCACGGCACATTCTCACAGGACGAGAGGTGGCCATAAAAATTATTGACAAGACACAACTTAATCCTACCAGCCTTCAAAAGCTCTTCAGGGAAGTAAGAATAATGAAGATTCTCAATCATCCAAATATTGTAAAGCTGTTTGAGGTCATAGAAACAGACAAGACCCTTTACCTGGTGATGGAGTACGCCAGCGGAGGGGAGGTGTTTGACTACCTCGTAGCGCACGGACGCATGAAGGAGAAGGAGGCCAGAGCTAAATTTAGACAGattgtATCAGCAGTTCAGTACTGCCATCAAAAACACATTGTCCACAGAGATCTCAAGGCAGAAAATCTACTTCTGGATGCGGACATGAACATTAAAATTGCAGACTTCGGTTTCAGTAATGAATTCACCATCGGGAACAAACTAGACACGTTTTGCGGCAGCCCGCCGTACGCAGCGCCAGAGCTTTTCCAGGGCAAGAAGTACGACGGGCCGGAGGTGGACGTGTGGAGTTTGGGGGTTATTCTGTACACGCTGGTCAGCGGATCGTTGCCCTTTGATGGACAGAATCTAAAGGAGCTTCGTGAGCGAGTGTTGAGAGGCAAATATCGGATTCCCTTCTACATGTCTACTGACTGTGAAAACCTCCTAAAACGCTTCCTGGTGCTGAACCCAGTCAAACGGGGCACGCTCGAGCAAATCATGAAGGATCGATGGATCAATGCGGGCTGTGAGGAGGAAGAGCTCAAACCCTTTGTTGAGCCCGAGCTCGACATCTCTGATCAGAAGAGAATCGATATCATGGTGGGAATGGGTTACTCACGGGAGGAGATCCATGAATCTCTAACCAGGATGAAGTACGATGAAATCACAGCGACGTACCTGCTGTTAGGCAGAAAGTCTACTGAGTTGGAGGTGAGTGATTCGAGCTCCAGCAGTAACCTCTCTTTGGCGAAGGCCAGACCCAACAGTGAACACAACAACGGCCAGTCACCGTCTCACCTCAAAGTCCAGAAGAACGCCTCAACCAACCAGAAACAGCGGCGCTACAGTGACCAAGCTGGTCCCACCATTCCCTCGGTGGGTTACCCTAAGAGAAGTCAGACCACTTCAGCAGAAAGTGAGCATAAAGAGGAGGGCAGTGCTCAGGCACGCAAGTCCAGCTCATCTGGCAGCCGTGGGATGGCTCCAGCGAGCCCCATGCTGGGCAACGCCAACAACCCCAACAAGGCCGACATTCCTGACCGCAAAAAGAGCGCCGGTGCCCCTGGGAACAATTCAGTGTCCAGCGGCATGACCAGGAGAAACACGTATGTGTGTAGTGAGAGAAACGCAACCGACCGGCACTCCGTCATCCAGAACGGCAAAGAGAACAGTACGAGCACGGCTCAGACGAGTCAGCGAAACCCTGGTTCCTCCACCCACAGCATTAGCAGTGCGACTCCACCAGACCGCCTGCGTTTCCCTAGAGGAACTCTGAGCCGCAGCACATTCCATGGAGGACAACTGAGAGAGAGACGCACCGCCACATACAATGGACCTCCAGCTTCTCCAACATTATCACACGACGCCACGCCACTGTCACAGTCCCGGAGCCGTGGATCAACAAACCTTTTCACCAAGCTCACATCCAAACTCACACGCAGAAATATGTCATTCAGGTTTTCTAAAAGAGTGCCGGCAGAATGCGATAGAAATGGGAGATATGACGACTCAAGtcGTAATGTGTCAGGGGATCAGAAAGAGGAACATAAAGACGCCAAACCCCGCTCGCTCCGATTCACCTGGAGCATGAAGACCACCTCGTCCATGGAGCCCACAGAAATGATGCGCGAGATCCGCAAAGTCCTGGACGCCAACAACTGCGACTACGAGCAGCGCGAGCGATTCCTGCTGCTCTGCGTCCACGGCGACGGCCACGCCGAGAGTTTGGTCCAATGGGAGATGGAGGTGTGCAAACTGCCCCGCCTCTCGCTAAACGGCGTGCGCTTCAAGCGGATATCAGGAACATCCATCGCTTTCAAAAACATCGCATCCAAAATTGCCAACGAACTGAAGCTgtaaggaaaaaacaaaacataaaatgaaaatgtgaaagCAGCAAAAATGAACTAAGGCACAAAACTAGAGTAATCAAGCTGTACATTCTTTTTCAACAAGTAGCAGATACAAGGAGCGTTTTCCTCAAACACTTACAAAGTATGTACTGAAAATATTGTATAGAATCATGCCTTAGGCAATAATTTCCTGCATCTTTGAcgcattattaatattgttgttattgttattattattattattattgtgggaTGGATTCAAACTGTAGGAAAACAAAAGACGCTTTCGTttcttcatttttattaagattttGGTTTTCGTTTATGCACTACTGCATTAGAGATGCCCTGTGGGGCCAAAAATGACTGAAAGCGTGTATTTTAACCAGACGATTAATCGCTCCAGTATCAGTCCAGCTCTATCCCAATGCCAAAACTAATCTGATTTAGGGACAGGacatttatttgcacattttccCCAATAAAGGACCACATATTGTTACACTTCATCCCATGCTTTTTCAGTTCTCTTTTGACCCCCAGTCCTACGTCAGATTATtcccattttttgttttatagatgGGATCAGCTTAATGTCAGGAACATTAAATAGATAGTTCAGCCTAACAAAAtgaaaaattgctgtaatttactCGCCCTCAGGCTATCCAATATGGAGAATCCCtcaaaaattaaatgtttgcCTTCATTTTGTTCAAATACTGTATAAATGGAAGGTATTTGGATGAATGTCAGTATCCAAACAGATCTCATCACCCATTTATTATACCTTTAAAGACCTTGTTTAGCCTAGAACATGGCTTTGGTGATTCATACAAAAATCAAATCGTCAGAAAAATTCAATCCTCCTATCTCAGTCGCAAGAAACtgcttattatttactttataattACCTTAAATCAACAACTTCTGCAAATGGTCTGTTCACAAATTGTGAAActgctgtaaataatgttcagtttcttgtacAGATTATTTTATGGCTACAGAGTGCCATCAGGAAAAATTTAGTAATTTCGTTATGTCTTTGTGTTTTTTGATCCAGTAGCCAATGACTTGTATTTTACGAATCACAAAGGATCCCGATGTCAACTAATCATACTAAAGAGAAAAGGTCACCCTGAGGGCGAGTAAATTAGCAGCAACTGTTCAGTTTTTTAAGTGAGCCGTCTCTTGAAGAACGAGTTGAGATGTTTTCCTTTGTGCTCCATTGAAGTATTTAGTTTAAATCcttgaaaagtatttttttaagctTCTGAGATGACGAAATGCTCTTGAAATGTCTGTGCTTTGGCTCCGGCCCTCAGGGCGCACCATACAGTCGCACATGCTGAGTCATTCTGGGACACACAGTTCACTTCAGAACTTCAACTCGCCATTTCTGGCCTTCAGTATTCACTCCCATCCCAAAACCATTGgcactgttgttattattattataattttgatttaatgtttctgtttgctttttttttggaatgtaaaTAATGTACCTTAGTTTTGCAGCAATGACAttgatatatgttttttttttttctaagtctGGCTGAGAGTCGGAACCTATGGAAATTAATGTAACTCATCACAGAATAAGGTTAATCAGTGTCTCCATTAAAACAACTGAAAATC
>TCONS_00036129
GAACAATTCAGTGTCCAGCGGCATGACCAGGAGAAACACGTATGTGTGTAGTGAGAGAAACGCAACCGACCGGCACTCCGTCATCCAGAACGGCAAAGAGAACAGTACGAGCACGGCTCAGACGAGTCAGCGAAACCCTGGTTCCTCCACCCACAGCATTAGCAGTGCGACTCCACCAGACCGCCTGCGTTTCCCTAGAGGAACTCTGAGCCGCAGCACATTCCATGGAGGACAACTGAGAGAGAGACGCACCGCCACATACAATGGACCTCCAGCTTCTCCAACATTATCACACGACGCCACGCCACTGTCACAGTCCCGGAGCCGTGGATCAACAAACCTTTTCACCAAGCTCACATCCAAACTCACACGCAGAGTGCCGGCAGAATGCGATAGAAATGGGAGATATGACGACTCAAGtcGTAATGTGTCAGGGGATCAGAAAGAGGAACATAAAGACGCCAAACCCCGCTCGCTCCGATTCACCTGGAGCATGAAGACCACCTCGTCCATGGAGCCCACAGAAATGATGCGCGAGATCCGCAAAGTCCTGGACGCCAACAACTGCGACTACGAGCAGCGCGAGCGATTCCTGCTGCTCTGCGTCCACGGCGACGGCCACGCCGAGAGTTTGGTCCAA
>TCONS_00036130
ATCTTGGACGGAGCTCTATCTAGACTGGCAAAACCACACTCTTCGGGATgggaggaatttaatcaacctgGAGTGATTTAGAGCAGATCGTCTGGAGCACATGAACGAGACCGCGCATTCAGAAAGCCTATATTAAGACCCAGAACCGGTTTGAAGCGGACGCCCCCTCCCCTTTTTTCCTTGTCTGAACGCTGTGTGCAGTTTCTGAGGGGGCCTGGGAATTGTTTGTGCTTGAGTTTTACAATAGGCACTTCTCGCAAAGTTTTTTAAAGTAATCCAGGACGATGGTTTGGTTATGACCTGTCGGTTGCCAGGTCTTTTGCGGAGAGTTGCTGCTTTGTGTCGCCGGTGACCTGTTGTGTGCCGTTATGCGTCTGGATACGTTATTGCATTAATCTTGGATCTGTTACTCGTGCTGGAATCTGGTTTGGATGTCGATCCACTCCATGGTCTTCATCAGCTGGTGTCCGGCAGCTGTCCACCCTGCGAACTAAAGGTTGCTGTGATCAGACTCGGGTCCACTTTGGAGATAAAGACACATTAAAATGTCAACTAGAACACCACTACCTACTGTCAATGAGAGAGATACAGAAAACCACACATCACACACAGATGGGCGTAATGAAGTGGCATCTCGTCCTGGGCGGTCGGGCGCTCGCTGTCGAAACTCCATTGCCTCTTGTGCCGATGAGCAGCCACATATCGGCAACTACCGGCTCCTCAAAACCATCGGCAAGGGCAACTTTGCCAAGGTCAAATTGGCACGGCACATTCTCACAGGACGAGAGGTGGCCATAAAAATTATTGACAAGACACAACTTAATCCTACCAGCCTTCAAAAGCTCTTCAGGGAAGTAAGAATAATGAAGATTCTCAATCATCCAAATATTGTAAAGCTGTTTGAGGTCATAGAAACAGACAAGACCCTTTACCTGGTGATGGAGTACGCCAGCGGAGGGGAGGTGTTTGACTACCTCGTAGCGCACGGACGCATGAAGGAGAAGGAGGCCAGAGCTAAATTTAGACAGattgtATCAGCAGTTCAGTACTGCCATCAAAAACACATTGTCCACAGAGATCTCAAGGTAAGCTCAGGCAACAATTATTGTGTGATTGTTCTTTAACAGATAACACAAAAAGTCATTAATGCTTCTTTTGTTACTAAAGttttgtacagttgaaatcagacaTTTACACCTACTGTAATACACTGGTCCCACAAAACAAAACGCCAGGCGTAAaatcgtcatttaaaaaaaaaaa

Function

symbol description
mark3b Predicted to enable protein serine/threonine kinase activity and tau-protein kinase activity. Predicted to be involved in intracellular signal transduction and microtubule cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in dendrite. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in visual impairment and progressive phthisis bulbi. Orthologous to human MARK3 (microtubule affinity regulating kinase 3).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0050321 tau-protein kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-80 Predicted to enable protein serine/threonine kinase activity and tau-protein kinase activity. Predicted to be involved in intracellular signal transduction and microtubule cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in dendrite. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in visual impairment and progressive phthisis bulbi. Orthologous to human MARK3 (microtubule affinity regulating kinase 3).

Ensembl:

ensembl_id ENSDARG00000026630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036128 False 4411 mRNA 0.45 18 43792866 43917647
TCONS_00036129 False 640 mRNA 0.56 4 43794635 43811023
TCONS_00036130 True 1263 lncRNA 0.46 7 43838901 43917689

Neighbor

gene id symbol gene type direction distance location
XLOC_018357 laptm4a coding downstream 6351 43775793 ~ 43786515 (-)
XLOC_018356 matn3a coding downstream 17322 43760059 ~ 43775544 (-)
XLOC_018355 ttc32 coding downstream 42095 43746523 ~ 43750771 (-)
XLOC_018354 zpax1 coding downstream 49166 43737022 ~ 43743700 (-)
XLOC_018353 mixl1 coding downstream 69006 43715157 ~ 43723860 (-)
XLOC_018359 runx2b coding upstream 77159 43994848 ~ 44090660 (-)
XLOC_018360 NA coding upstream 175214 44092903 ~ 44095025 (-)
XLOC_018361 NA coding upstream 206114 44123803 ~ 44275988 (-)
XLOC_018362 NA coding upstream 428298 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 coding upstream 431253 44348942 ~ 44349057 (-)
XLOC_017928 CU539064.1 misc downstream 33739165 10053405 ~ 10053701 (-)
XLOC_018344 NA non-coding downstream 381259 43397723 ~ 43411607 (-)
XLOC_018345 AL928920.1 non-coding downstream 385361 43406707 ~ 43407505 (-)
XLOC_018342 AL845420.1 non-coding downstream 709799 43082949 ~ 43083067 (-)
XLOC_018339 AL845420.2 non-coding downstream 825478 42967274 ~ 42967388 (-)
XLOC_018338 NA non-coding downstream 940536 42849227 ~ 42852330 (-)
XLOC_018365 NA non-coding upstream 546656 44464345 ~ 44496245 (-)

Expression


Co-expression Network