Fish Transcriptome and Expression Database

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model fish

XLOC_018360

Basic Information

Item	Value
gene id	XLOC_018360
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	44092903 ~ 44095025 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036954
CAGGCGGAGCTGTGTGTTTCGTGTGAACGCAGTGAGTCAGTGAGCGTGATGGGGCTTTGTCACATGTTTGGGAGGCATCTCTTCTTCGCACACTCAACTGTCAGTCGGCTCTCCTCACATCACCTCAGGGTGAGCAGAGACAAGCAGCCCACGTCCACCAGCTGGAGAAAGATGGAGAGCTACAAAGAGCACAGGAGGGAAAGAAGAGCCcacatacggttgaagtcaga

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00036954	True	230	lncRNA	0.54	2	44092903	44095025

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_018359	runx2b	coding	downstream	2243	43994848 ~ 44090660 (-)
XLOC_018358	mark3b	coding	downstream	175214	43792866 ~ 43917689 (-)
XLOC_018357	laptm4a	coding	downstream	306388	43775793 ~ 43786515 (-)
XLOC_018356	matn3a	coding	downstream	317359	43760059 ~ 43775544 (-)
XLOC_018355	ttc32	coding	downstream	342132	43746523 ~ 43750771 (-)
XLOC_018361	NA	coding	upstream	28778	44123803 ~ 44275988 (-)
XLOC_018362	NA	coding	upstream	250962	44345987 ~ 44361396 (-)
XLOC_018363	BX664630.1	coding	upstream	253917	44348942 ~ 44349057 (-)
XLOC_018364	mut	coding	upstream	277720	44372745 ~ 44460789 (-)
XLOC_018365	NA	coding	upstream	369320	44464345 ~ 44496245 (-)
XLOC_017928	CU539064.1	misc	downstream	34039202	10053405 ~ 10053701 (-)
XLOC_018344	NA	non-coding	downstream	681296	43397723 ~ 43411607 (-)
XLOC_018345	AL928920.1	non-coding	downstream	685398	43406707 ~ 43407505 (-)
XLOC_018342	AL845420.1	non-coding	downstream	1009836	43082949 ~ 43083067 (-)
XLOC_018339	AL845420.2	non-coding	downstream	1125515	42967274 ~ 42967388 (-)
XLOC_018338	NA	non-coding	downstream	1240573	42849227 ~ 42852330 (-)
XLOC_018369	LO018355.1	non-coding	upstream	817188	44912213 ~ 44912331 (-)

Expression

Co-expression Network