XLOC_018365


Basic Information

Item Value
gene id XLOC_018365
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44464345 ~ 44496245 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036502
GGATGCTGCAGAATGGAAAGAAGTTTGACTCGTCACGAGACAGAAACAAGCCATTCAAGTTCAAGATCGGCCGACAAGAAGTCATCAAGGGCTGGGAGGAAGGAGTCGCACAAATGAGTTTGGGTCAGCGGGCGAAGATCACCTGCACCCCAGATATGGCGTACGGGGCCACAGGACACCCTGGTGTCATTCCTCCCAATGCCACGCTTATATTTGACGTAGAGCTGCTGAAATTGGAGTGAACCACTAGCTTTTACAGGGCTGAAGTCTTCAAATGGAGGAGGAGGAGATACACTAGTCTCGCCCCATCAACAAAACCTCCTTCGACATCATTTTTCTTGTTTTCTTACCTACAAATGTAACGTGTAGAGGGCGTTTAATTCTTTTCTACGCATGATGACTTTAACTATTTTGGCATAATGGTTTCATTCTGCTACATGCTAAGTGTTGTCATTTTTTCAATTAGCATTTTCCTGAAATTATGGGAATACAATACAATCATTAAAATCAGGATCGGACTGAATCCACCGCCTTACTGAATTTAGTAGGGTTAGTATTTTACTGGAGGGTTTAATGGGTTTTAATTctgacttatttattatttttgagggGCATTAACAAGCACTATCTGCATTGCCACTTTTGATAGACGTATATCCTGCTGAGTGCATATGATAATGTTACTGTATTTGctatatattttctatatatataaatatatcccTTACAAACATTTGCTGTAAGTCTCATTCGAAACTTTAAAAATGAGACGTGGAACAAACTGATTATGTATTATTGAGTGCTTTGGCTTCAATTGACATTTGGTCAATTTGCTCAATAAAGATATTTGAACTCTTTGAA
>TCONS_00036138
GTGACAGTGGGCGGAGAGCTGCTGCCTCAGTCTCTCTCCCTCTcgccttctctttctctctgtctgtctcactACAGTAGGATCTACCCGCGCGAACAGAATGGGTGTTGAGGTTGAAACAATATCTCCAGGAGACGGAAGAACCTTTCCGAAGAAAGGACAGACATGCGTTGTGCATTACATAGGGATGCTGCAGAATGGAAAGAAGTTTGACTCGTCACGAGACAGAAACAAGCCATTCAAGTTCAAGATCGGCCGACAAGAAGTCATCAAGGGCTGGGAGGAAGGAGTCGCACAAATGAGTTTGGGTCAGCGGGCGAAGATCACCTGCACCCCAGATATGGCGTACGGGGCCACAGGACACCCTGGTGTCATTCCTCCCAATGCCACGCTTATATTTGACGTAGAGCTGCTGAAATTGGAGTGAACCACTAGCTTTTACAGGGCTGAAGTCTTCAAATGGAGGAGGAGGAGATACACTAGTCTCGCCCCATCAACAAAACCTCCTTCGACATCATTTTTCTTGTTTTCTTACCTACAAATGTAACGTGTAGAGGGCGTTTAATTCTTTTCTACGCATGATGACTTTAACTATTTTGGCATAATGGTTTCATTCTGCTACATGCTAAGTGTTGTCATTTTTTCAATTAGCATTTTCCTGAAATTATGGGAATACAATACAATCATTAAAATCAGGATCGGACTGAATCCACCGCCTTACTGAATTTAGTAGGGTTAGTATTTTACTGGAGGGTTTAATGGGTTTTAATTctgacttatttattatttttgagggGCATTAACAAGCACTATCTGCATTGCCACTTTTGATAGACGTATATCCTGCTGAGTGCATATGATAATGTTACTGTATTTGctatatattttctatatatataaatatatcccTTACAAACATTTGCTGTAAGTCTCATTCGAAACTTTAAAAATGAGACGTGGAACAAACTGATTATGTATTATTGAGTGCTTTGGCTTCAATTGACATTTGGTCAATTTGCTCAATAAAGATATTTGAACTCTTTGAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0051924 regulation of calcium ion transport biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005861 troponin complex cellular_component
GO:0005576 extracellular region cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0150034 distal axon cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-1785 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).

Ensembl:

ensembl_id ENSDARG00000052625

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036502 False 861 lncRNA 0.39 2 44464345 44465813
TCONS_00036138 True 1046 mRNA 0.41 4 44464345 44496245

Neighbor

gene id symbol gene type direction distance location
XLOC_018364 mut coding downstream 3556 44372745 ~ 44460789 (-)
XLOC_018362 NA coding downstream 102949 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 coding downstream 115288 44348942 ~ 44349057 (-)
XLOC_018361 NA coding downstream 188357 44123803 ~ 44275988 (-)
XLOC_018360 NA coding downstream 369320 44092903 ~ 44095025 (-)
XLOC_018366 mfsd2b coding upstream 11422 44507667 ~ 44557037 (-)
XLOC_018367 ubxn2a coding upstream 70694 44566939 ~ 44576949 (-)
XLOC_018368 klhl29 coding upstream 303130 44799375 ~ 45062514 (-)
XLOC_018369 LO018355.1 coding upstream 415968 44912213 ~ 44912331 (-)
XLOC_018370 NA coding upstream 872400 45368645 ~ 45423498 (-)
XLOC_017928 CU539064.1 misc downstream 34410644 10053405 ~ 10053701 (-)
XLOC_018344 NA non-coding downstream 1052738 43397723 ~ 43411607 (-)
XLOC_018371 NA non-coding upstream 1055266 45551511 ~ 45560420 (-)
XLOC_018376 NA non-coding upstream 1324295 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding upstream 1356569 45852814 ~ 45854934 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G154201 NA unknown CI01000029 null 4472400 ~ 4477212 (-)
eurasian perch (Perca fluviatilis) G153640 NA non-coding NC_053126.1 CM020923.1 10169942 ~ 10235939 (+)
striped catfish (Pangasianodon hypophthalmus) G147787 LOC108274999 non-coding NC_047603.1 CM018549.1 13390317 ~ 13390708 (+)