XLOC_018366 (mfsd2b)


Basic Information

Item Value
gene id XLOC_018366
gene name mfsd2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44507667 ~ 44557037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036139
atgttttacgcagcggatacccttccaACTCTTCTGGATCAGAAGCTCTCGGTGTGCAGTAAATTATGTTTCGCCATTGGAGGAGCACCCAATCAGGTCGCAGGAAGTGCAACAGCATTTTTCCTCCAGATATATCTGCTCGACATCGCACAGATTAACCCGTTCCAGGCTTCCATGGTTTTGTTTGTTGGCAAGGCCTGGGGTGCAGTGACCGACCCCATTGTTGGCTTCTTCATTACTAAGAGCAAATGGACAAAGATCGGACGACTTATGCCATGGATGGTGGGCTGCACTCCATTCATGGTGGTCTCCTATTTCTACCTTTGGTTTGTCCCACCATTTACCAACGGGAGGTTCATGTGGTatctgggcttttactgcctcTACCAAACTCTCATCACATGTTTCCACGTGCCTTATTCTGCTCTGACCATGTTCTTGAGCACTGACCAGCGCGAGCGAGACTCAGCTACAGCTTACCGTATGACAGTGGAGGTTTTGGGAACTTTAGTGGGTGCCGCCATTCAGGGTCAGATAGTAGCGAGCGCACACACTCTGAAGCACTGTCCACATCGCAACCTGACGGCTGCTCACCTGACCAACAGCAGCGGCACTGAAATTATCAGATCACTGAAGGAAGTGTACATGATCGCTGCTGGCGTGATCGGTGGCCTGTTTCTGGTTTGTACGGtggtcatgtttttgggagtcaAAGAGAGAGATGATCCCTATGCTCCTAAAACAGACAAGGCTATTCCTTTCCACAAGGGCTTTATTTTAGTCATGAAACACGGCTCCTACCTCACTCTGACTGCATCTTTCCTTTTCATATCTGTGGCCATCCAGCTGATTCAGAGTAACTTCGTGTTGTTCTGCACATACGCGGTGGAGCTGAGAGATCACTTTCAGAACATTGTTTTGACCATTTTGATGTCGGCAGCAGTGAGCATCCCGTTCTGGCAGTGGTTTCTTGAGAAGTTTGGGAAGAAGACGGCAGCTTTCTGCGGCATAACATGGATTATGCCGTTCACAGTGATGCTGGTGTTCATCCCGAATTTAATAGTGGCGTATGTGGTGGCCGTGTCATCTGGACTCAGTGTGGCCGCTTCTCTCCTCTTACCCTGGTCAATGTTACCCGATGTAGTCGATGACTTCAGACTGGCGAACCGCAACTCAAAGGGACACGAGGCCATCTTCTACTCTCTATACGCTTTCTTCACCAAATTCGCTGCAGGCATTTCTCTCGGAGTTTCCACACTTTGTTTACAgTTTGCAGGTTATGACACTGGAGCGTGTCGACAGCCTCTTCCAGTGGTTTACACACTGAAGCTGCTCATTGGCGCTGCCCCGGTGGCCTGCATCACCACCGGCCTCATGATCCTCGTGGTTTATCCTATAAGCGAAGATGTCCGGTTACGAAACAAAGTTGCTCTAGAGGAACTCAGGGAGAGGTGTAGGCGATCGTCCATTACATAG
>TCONS_00036140
gtgtgtgcgtgtgtgtgtgtgtgtgatggaatGAACCCGCAGTTCATCACCGCTGCAGCAGCTGCGCGCCTCACCGCATCCCTCAGTATGTGAATGAACACAGCTGTAACAAGCTCTGTGAAGCCAGAGAGTTTATCTGCCGTCTCTGTACCGGCTGCCATGGCCAAAGGAGAGAAAGCCCGGGTCACATCAGGGGATAAACTCATGATGAAGCACCCCGAACCTGCTTTCACCAAGGTTCCGCCACAGACTCTTCTGGATCAGAAGCTCTCGGTGTGCAGTAAATTATGTTTCGCCATTGGAGGAGCACCCAATCAGGTCGCAGGAAGTGCAACAGCATTTTTCCTCCAGATATATCTGCTCGACATCGCACAGATTAACCCGTTCCAGGCTTCCATGGTTTTGTTTGTTGGCAAGGCCTGGGGTGCAGTGACCGACCCCATTGTTGGCTTCTTCATTACTAAGAGCAAATGGACAAAGATCGGACGACTTATGCCATGGATGGTGGGCTGCACTCCATTCATGGTGGTCTCCTATTTCTACCTTTGGTTTGTCCCACCATTTACCAACGGGAGGTTCATGTGGTatctgggcttttactgcctcTACCAAACTCTCATCACATGTTTCCACGTGCCTTATTCTGCTCTGACCATGTTCTTGAGCACTGACCAGCGCGAGCGAGACTCAGCTACAGCTTACCGTATGACAGTGGAGGTTTTGGGAACTTTAGTGGGTGCCGCCATTCAGGGTCAGATAGTAGCGAGCGCACACACTCTGAAGCACTGTCCACATCGCAACCTGACGGCTGCTCACCTGACCAACAGCAGCGGCACTGAAATTATCAGATCACTGGCGCTATCACAGGACTTCCTGTCACATGCTAAGGAAGTGTACATGATCGCTGCTGGCGTGATCGGTGGCCTGTTTCTGGTTTGTACGGtggtcatgtttttgggagtcaAAGAGAGAGATGATCCCTATGCTCCTAAAACAGACAAGGCTATTCCTTTCCACAAGGGCTTTATTTTAGTCATGAAACACGGCTCCTACCTCACTCTGACTGCATCTTTCCTTTTCATATCTGTGGCCATCCAGCTGATTCAGAGTAACTTCGTGTTGTTCTGCACATACGCGGTGGAGCTGAGAGATCACTTTCAGAACATTGTTTTGACCATTTTGATGTCGGCAGCAGTGAGCATCCCGTTCTGGCAGTGGTTTCTTGAGAAGTTTGGGAAGAAGACGGCAGCTTTCTGCGGCATAACATGGATTATGCCGTTCACAGTGATGCTGGTGTTCATCCCGAATTTAATAGTGGCGTATGTGGTGGCCGTGTCATCTGGACTCAGTGTGGCCGCTTCTCTCCTCTTACCCTGGTCAATGTTACCCGATGTAGTCGATGACTTCAGACTGGCGAACCGCAACTCAAAGGGACACGAGGCCATCTTCTACTCTCTATACGCTTTCTTCACCAAATTCGCTGCAGGCATTTCTCTCGGAGTTTCCACACTTTGTTTACAgTTTGCAGGTTATGACACTGGAGCGTGTCGACAGCCTCTTCCAGTGGTTTACACACTGAAGCTGCTCATTGGCGCTGCCCCGGTGGCCTGCATCACCACCGGCCTCATGATCCTCGTGGTTTATCCTATAAGCGAAGATGTCCGGTTACGAAACAAAGTTGCTCTAGAGGAACTCAGAAAGCAGAGCATCACGTGTAAAACTCTGCGAGCTGATCTAAGCAGCGTGTGACTTCTTCAAACAGCAGATCCTGATATTCCAGCCTCGCGCTGGGATGAGCTGTTAGTGTATATTACACTGTGTGACATATATCATGTTTTACTGTAAACATCTCCGTTTGCTTCTGTATCCAGTCCGTTTCTGTATTTTTACATGAACATTAATAGCCACATATTCAGTTTTACGCTAATTTATACACACGGATGgactatacatacatatatatcatatatcaggATTTCCTCAGGGAAAATAAACTGATAGTATATTGCTTAAATTGTATTagtgattataattattatcgaATGACTCACTGAATTCATGCATTAATAAAACTTGTGCTGGTTCACGTA

Function

symbol description
mfsd2b Predicted to enable sphingolipid transporter activity. Predicted to be involved in organic substance transport. Predicted to act upstream of or within carbohydrate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human MFSD2B (major facilitator superfamily domain containing 2B).

GO:

id name namespace
GO:0071702 organic substance transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046624 sphingolipid transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041210-308 Predicted to enable sphingolipid transporter activity. Predicted to be involved in organic substance transport. Predicted to act upstream of or within carbohydrate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human MFSD2B (major facilitator superfamily domain containing 2B).

Ensembl:

ensembl_id ENSDARG00000030263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036139 False 1476 mRNA 0.50 14 44507667 44543639
TCONS_00036140 True 2090 mRNA 0.48 15 44509276 44557037

Neighbor

gene id symbol gene type direction distance location
XLOC_018365 NA coding downstream 11422 44464345 ~ 44496245 (-)
XLOC_018364 mut coding downstream 46878 44372745 ~ 44460789 (-)
XLOC_018362 NA coding downstream 146271 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 coding downstream 158610 44348942 ~ 44349057 (-)
XLOC_018361 NA coding downstream 231679 44123803 ~ 44275988 (-)
XLOC_018367 ubxn2a coding upstream 9902 44566939 ~ 44576949 (-)
XLOC_018368 klhl29 coding upstream 242338 44799375 ~ 45062514 (-)
XLOC_018369 LO018355.1 coding upstream 355176 44912213 ~ 44912331 (-)
XLOC_018370 NA coding upstream 811608 45368645 ~ 45423498 (-)
XLOC_018371 NA coding upstream 994474 45551511 ~ 45560420 (-)
XLOC_017928 CU539064.1 misc downstream 34453966 10053405 ~ 10053701 (-)
XLOC_018360 NA non-coding downstream 412642 44092903 ~ 44095025 (-)
XLOC_018376 NA non-coding upstream 1263503 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding upstream 1295777 45852814 ~ 45854934 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_04485919_04510826 MFSD2B coding CI01000029 null 4485919 ~ 4510826 (-)