XLOC_018367 (ubxn2a)


Basic Information

Item Value
gene id XLOC_018367
gene name ubxn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44566939 ~ 44576949 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036141
GAGCGGCATGACAAACGAGAGAAACTTACGAGCTGAAAGGACAGTTTTACGACACATTTGAAGCCTTACACTGATGGACAACAGAAGACGTTATGATGAAAAATATTGATTCAAGAGAAAGGCATGAAGATGACACATGGTGTGAAGGTGCACAaaatgaggaagaggaggaggaggaggatgaagaggcAAGCCCTATTAGATCCAGTTTCTCCGTCGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTTGCCAGTAGTGGTAAAAAGGTTGAGATTGTGGTGAGACTGTGGAAAAATGGCTTCACGCTGAATGACGAAGACTTGCGCAGTTACACCCAAGAGGAAAACCAAGAGTTCTTGGAGGCCATTAAAAAGGGTGAGCTGCCTCTGGAGCTTGAAGGAAGAGCTGAAGATGAGGAACTAGAAGTCAATGTGGAGGACATGAAGGATGAAGTTTATGTCCCGAAGAAAAAGATTTTTCACCCATTTACAGGCCGAGGTTACAGACTGGGAAGTGTGGCTCCGCGAGTGGTGGCCAGGTCGCGGTCGATACACGAGGACTGTTCTGGTCCTCCTGTCCCAGCCGTGGAGCTGAATGAAGATCTCCCAGTGACCTCCCTGCAGATCTGGCTGGCAGACGGTCGGCGACTGGTGCAGAGGTTTAATCTGTGCCATCGGATCAGCGATGTGCAGCGTTTTGTGGAGCAGGCTCAGATCACGGACACTCCGTTCATCCTGACCACATCGCTGCCGTTCAGAGAGCTGACAGATGAGGCTCAGAGTTTGGAGGAAGCCGACTTGGCAAACGCTGTCATCGTTCAGAGGCCTGTTAACACACATGCTCCATTTGGGCACTCCTGACTGTTCCTTCTTTAAACAGAGACTCAAATATATTGGTTTTGCCCCA
>TCONS_00036142
ATGAAAAATATTGATTCAAGAGAAAGGCATGAAGATGACACATGGTGTGAAGGTGCACAaaatgaggaagaggaggaggaggaggatgaagaggcAAGCCCTATTAGATCCAGTTTCTCCGTCGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTTGCCAGTAGTGGTAAAAAGGTTGAGATTGTGGTGAGACTGTGGAAAAATGGCTTCACGCTGAATGACGAAGACTTGCGCAGTTACACCCAAGAGGAAAACCAAGAGTTCTTGGAGGCCATTAAAAAGGGTGAGCTGCCTCTGGAGCTTGAAGGAAGAGCTGAAGATGAGGAACTAGAAGTCAATGTGGAGGACATGAAGGATGAAGTTTATGTCCCGAAGAAAAAGATTTTTCACCCATTTACAGGCCGAGGTTACAGACTGGGAAGTGTGGCTCCGCGAGTGGTGGCCAGGTCGCGGTCGATACACGAGGACTGTTCTGGTCCTCCTGTCCCAGCCGTGGAGCTGAATGAAGATCTCCCAGTGACCTCCCTGCAGATCTGGCTGGCAGACGGTCGGCGACTGGTGCAGAGGTTTAATCTGTGCCATCGGATCAGCGATGTGCAGCGTTTTGTGGAGCAGGCTCAGATCACGGACACTCCGTTCATCCTGACCACATCGCTGCCGTTCAGAGAGCTGACAGATGAGGCTCAGAGTTTGGAGGAAGCCGACTTGGCAAACGCTGTCATCGTTCAGAGGCCTGTTAACACACATGCTCCATTTGGGCACTCCTGA

Function

symbol description
ubxn2a Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A).

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0007030 Golgi organization biological_process
GO:0061025 membrane fusion biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0031468 nuclear envelope reassembly biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-110411-202 Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A).

Ensembl:

ensembl_id ENSDARG00000087180

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036141 False 915 mRNA 0.50 7 44566939 44576949
TCONS_00036142 True 774 mRNA 0.51 6 44566985 44575103

Neighbor

gene id symbol gene type direction distance location
XLOC_018366 mfsd2b coding downstream 9902 44507667 ~ 44557037 (-)
XLOC_018365 NA coding downstream 70694 44464345 ~ 44496245 (-)
XLOC_018364 mut coding downstream 106150 44372745 ~ 44460789 (-)
XLOC_018362 NA coding downstream 205543 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 coding downstream 217882 44348942 ~ 44349057 (-)
XLOC_018368 klhl29 coding upstream 222426 44799375 ~ 45062514 (-)
XLOC_018369 LO018355.1 coding upstream 335264 44912213 ~ 44912331 (-)
XLOC_018370 NA coding upstream 791696 45368645 ~ 45423498 (-)
XLOC_018371 NA coding upstream 974562 45551511 ~ 45560420 (-)
XLOC_018372 napbb coding upstream 1066874 45643823 ~ 45661053 (-)
XLOC_017928 CU539064.1 misc downstream 34513238 10053405 ~ 10053701 (-)
XLOC_018361 NA non-coding downstream 290951 44123803 ~ 44275988 (-)
XLOC_018360 NA non-coding downstream 471914 44092903 ~ 44095025 (-)
XLOC_018376 NA non-coding upstream 1243591 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding upstream 1275865 45852814 ~ 45854934 (-)

Expression


Co-expression Network