XLOC_001837 (mn1a)


Basic Information

Item Value
gene id XLOC_001837
gene name mn1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4095917 ~ 4112836 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003656
ATGAACTCTAATTATAACAGTGCTGGATTCCATATGAAAGGGCCGTCGGTAGCTGTGGAGCCAATGATGGGTCCCCTAAATGAATCCCCTATGCAGGGACTCAACTTTGTCTCGAATAGAGATCAGTATGGGTTCCAGACTCATGGCCACGGGGATATGCTCGGTATGGGAGTTCAGCCACAACATCAGCTCCACATGCAAGGACCATTCAACCATCAACCTCCTAACCACGACCAGCATTCACATCTGTACCAGGACAGCGTTCCCTCTTGCCTGCACGGCGACAGGCACATGGGTTTCAGCAGCACCAACGCGGGCCACCCGCATATGTTTGAGGGGGGATTCAGTCAGCAGCTCGCAGAGCCCCAGTCGCGAGAATGCATCTCGCAGCAGCAACAACAGAGAATGGCTGCGATGCCTGAGTTTCAGCCGCACGGCCATCCGAACGGCAATCATGCTGTTCCAGCACCATGTCTTCCTCTAGACCAGTCACCAAACCGTGCTGCTTCGTTCCACGGCTTGCCATCTTCATCGCCTGAAACCCATAGACTTGAACACTACAGGCTTTTCCCACAGGGCAGAATGGGGGGATCAGAGCACTGTTTTCCCTGTGATCCTCTGACTGGGAATTTTGACATGACAGGATTCTCCACCGCGGACTCTTCCGAGCACAAACTGCCCTATTGTGAAACAGGGAACCAAGTAGTCGGGGGTAATTTTTCTACTTGTAATCGAAGTGGTTCCCGAGGGCCCATGATGGGCAGCTCAAAAGTTGACCAGCAGCTACCTCAGCAAAATGTGTTTTCTGACCGATTTGGAAATAGGGGCAAAATGGATCCGGGGGTTAATACGAGGCACCACCTCATGGCACAGCAAAGACCAGGACCTGTTGTCAGGCAGAACCCTGGTTCCCCTGCCCTCCCTCGATTTTATCACACTCCAGACTTTGTAGCAAACAATACAGATGTTCAAGGCGGTGGCCCAATGGTGCACGTTCAGCACGGCCACCTGGATCGGCCCATACATAGACTGAACAACCATAACATGCACCCTTTCGGGGAGCCGGTGTTCGATGTCCCCCAACTAGCCCCTCAGCCCCCACATCACCTCAGCTCACTACCCTATTTGAACATGGCTAAAAGGCCACGGTTTGATCTCCCGAATGGCTCCGCTGGAGAAAGCTGCAGCCCCCTAAGCCACAGCTTACATAATCGGCCCAGTCTTGAGAACCACCTCTCCCCCTCGGCATTCCCCTCTCCCATGGGGGACTTTACATCTCATGTGACGGATGGGTTTCCATCCGGCCCCCTACCCTTGAGCTCTGGcccacagcagcagcagcagcagcagcagcagcagcggcgACAGAATGCAGCAATGATGATCAAACAAATGGCATCCAGGAGCCAACAACAGAGAATGAGGCAACCTGATCTGCAGCAGTTAAATCTCCACGGAGATGTCACTTCAAATGGCATGGTCTGTCGAGGGCCTCTGGGCAGTGTGTCTCAGTCCAATTTTGAGAAGAAGCATAATTTTCACGGAAACTTTGACAGCCCCCACCTACCTCAAGAAAACTCATGGTTTCCTGAGCCACAGCAGCACTGTagagaaacaaacacacatgccttGGAGCAGGCAGAAAATGGACACAACATTATTTTTAGACCAAGCGTCACAAGCATGGACATGCAGTCTTTGAATTCTCCTGGAGCACATCATCCGTTCGAAAATAATGTCAGCAATCCTCTGCAGATGCAGTCTCCCGATGAGAGCAACATGCAGTCGGGCGCACCCACAGACAGGAGGCCGGCTGAATTCGGAGGGATGGTGATGAGGAGGCAGCACAGCTTCCCTCCTGGAGGGCCAAGTCAACAGGGAGCCCCCCAGAGCAATCCTCCAGGATTTAGCTCCTCTCCAGGGAACTATCCCGCCCATCCTGAGTACCTCTCCAGCCAGCACCTGTCAGTCAATAAGCTTGGGGCCCTCTCTTTGGGGAATTTGAACAAAGCCAGTACAAAAGACAGTGTGTTTGGCCAAAGCTGTCTGGCAGCTCTTTCCACTGCCTGCCAAAATATGATCGCCAGCCTTGGGGCCCCGAACCTCAATGTGACTTTTAATAAGAAAAGTCAAAACGAGGCCAAACGCAAAGCAGGTCAGGTTGAGCAGGACATAAATAGCAGTGGCAGTAGCGGCCCAGGGGCAGAGTATTTCCAGAGCAATGCTTCTCAGAATAGTCAAACGCCTTGCTCTGGGAATAACAACAATACGATGGTGGGTCAAAGTGGTACGGGCCAGATGGTGAAAAGGGAAGCGAGCACCCTTTCCCCAAATGACAGCATGGAGTCTGGATGTGAGGGGAAAATGGCAACAGGCAACGGTAAAGGGAGGGGGAAGAAGAGACGAGACAGCGGGCACATCAGTCCTGGAAACTTCTCACCTCCTAGTGGCGGTAACCCCGTCGTGAGCCCAGGTCAGCAGGGCTCCAATTTGAGCATGGGCATGGAGAGTCGAGGTAAGACCCCAGAGAGGACTCTAGTCTCCCCTTCTTTCGGTAAGCCGGACCTCGCCACCTCTATGGACAGCGGAATTCAAAGCGTGGGCAAGTCGGACGGCGTTTCGCCATGCATGGATTATTTAGACGATGCCAGCCCTAACTACAGCACCGAGGATCCAAGGCCCTGCAGAGCTGGTGTAAAGTGTAACTCGGAAAACAGGGCCAGCTATGCTGATGCTTCATGCATGGAACAGGTGCGAACGCCATTGAGCAACACAGGGCAGGATGAGGTTCATCCTCTGGAGATTTTGCAAGCTCAGATCCAGCTGCAAAGACAGCAGTTCAGCATCTCGGAGGACCAACCCATGGGAGGGAAAACAAGCAAAAAGGCTGACTGCCAGGCCAGTCTAAACGGAGAATGCACCCTGGCCAACTCTAGCCCGGTTACAGGCAAGAGCTCTGTGAATACCATTGACCTTGACTCTCTTATGACAGAGCAGCATGCCACCTGGTATGTCCCTGGCAATAAGGCTCTGATAGAGGACCCCAGTAACGACAAGTGCCTGGGATACTGGGAGCGAGCACGGGGCCAGAGTGACAACAAAGAAGGACATGGGTAGGGGCACTTCTCTGATGACTCTTCGTAGCGTATAACTAAAAAAAAG

Function

symbol description
mn1a Predicted to act upstream of or within regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in familial meningioma; meningioma; and myeloid leukemia. Orthologous to human MN1 (MN1 proto-oncogene, transcriptional regulator).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4968 Predicted to act upstream of or within regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in familial meningioma; meningioma; and myeloid leukemia. Orthologous to human MN1 (MN1 proto-oncogene, transcriptional regulator).

Ensembl:

ensembl_id ENSDARG00000076529

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003656 True 3162 mRNA 0.53 2 4095917 4112836

Neighbor

gene id symbol gene type direction distance location
XLOC_001836 pitpnb coding upstream 10701 4046448 ~ 4085216 (+)
XLOC_001835 TTC28 coding upstream 56131 3875716 ~ 4039786 (+)
XLOC_001834 NA coding upstream 238032 3857067 ~ 3857885 (+)
XLOC_001833 pla2g3 coding upstream 562920 3520256 ~ 3532997 (+)
XLOC_001832 rph3aa coding upstream 585041 3507861 ~ 3510876 (+)
XLOC_001838 plppr1 coding downstream 123162 4235998 ~ 4259274 (+)
XLOC_001839 NA coding downstream 176869 4289705 ~ 4299850 (+)
XLOC_001840 NA coding downstream 202127 4314963 ~ 4318863 (+)
XLOC_001841 NA coding downstream 222356 4335192 ~ 4341646 (+)
XLOC_001842 dre-mir-430a-1 coding downstream 380441 4493277 ~ 4493358 (+)
XLOC_001830 CU570980.1 non-coding upstream 687017 3408783 ~ 3408900 (+)
XLOC_001827 NA non-coding upstream 826099 3262578 ~ 3269818 (+)
XLOC_001823 NA non-coding upstream 1116413 2977535 ~ 2979504 (+)
XLOC_001815 FP085363.1 non-coding upstream 1407236 2688565 ~ 2688681 (+)
XLOC_001845 NA non-coding downstream 697047 4809883 ~ 4810251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000168_00789765_00794770 MN1A coding CI01000168 null 789143 ~ 794770 (-)