XLOC_018370


Basic Information

Item Value
gene id XLOC_018370
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45368645 ~ 45423498 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036967
cggccctccaggaccgagtttgcccacccctggtataGGATGATCTCAAACCTTTCACTCAAcattcacaaaacaaaaattaattttattcaaacattttaagaattgtaaaactgcacaaatacaatggtttaaaaaaacagatttaattaaatgaacatgctttccaaaaatatttttaattttaagaaaaagtcttagattttttattcataatcattatatattgttaatatatttatattttggacGGCATTATGCTACAGTGGacagcatgatcgcctcacagcaacaacgtctctggttcgagcctcgcctggCTTTTCTGTGAGGGTCGAGAAGCAAAGGTCAGACCCCGCCGGTACATTTGCTGATGGATGCACTTGTTAGTGAAGTTCAGCAGTGGACAATCCCTCCTTACAGGTGTCGCCGCGTCTCCCGGAATCGCGCGCGCGGAGCTCACggcgctgtaaaaaaaaagaaagtgggaGGCGCTTCCGAGGAGTAAAGTATCAGCTGGGAGAGACCGGAGCACATTCACTCGCTTCTCTGTGTGCGGACAGCATCTGTCAACTCACCACAGCGCGCAAAACAGCGAGAAACACACCTGCTACACACGCCAGAGGACACAGCATGCGATGAACGAGCCGCCCGCGCATCAGGAACAGCGTCCACATCTGAGGAACAACACGGACAGACGCCTGGCATCCCTGGATAACTCGGTTTGGAGGTGaggatgatggtgatgatgatggcaGACGCGTTTATTGTATGGAGCTTCACTATTATGTCACGTGCGCGTTCTGGTGGCAGATTGGCACACGCCAGGCGCTCGCGTTTTGGTGAAGGTGTTTGTGCGCACGCCATTCCCTTTCTGCTGGATTTGTGGAGAGTATAAAAAAAACTTCCTAGTGGGAATTAATGGATTGGGTCACTTTGGAGCACATGGATGATGCTTTTGTTTTTTGGTCCTGGATACTCCTTGTGGTTTGGCCTGAGACGCTGGAGGTTTACCTGAGAGGGAGAGTTTTAGTTTCACACCTTAAGTGAACCTGAAGTCTGTGGTTGCTTCAATAAACCTGTGTGGACAGCGTTTTGTTGTTGATATGGATAGGTTGTGGTCTTAAATGCCTTCTAGGAGTAGGTTTTGAGACGCAACCACTGATCACCTGAGTCAGGTATTTGTTTACAGTAGGTCTCGTCGATTTCGCTTATATGTTTGTTTACAATTAATGACAGATTTTGAGCTTTGTTTGATCGCCTTTTGCTAAGTCAGCGTTAATGTAGATGGATATTGTTAAAAAGCAGGTCATTTACAATGTCCTCGGTTGATCCTTGCACTTGTACAGTAGATGTTTATGTTAGCTTAGTGAATGGTGCTCTGTAAAAATAGCGAAAGCAGCCACCTATATAATAATCTTTGATTATAATTACATATATTGAACGATACGTGCAATATAATGTGCAGTAGATATTTATGTTTGCTTAGTGATGGTTTCATGCTATATAAGACGAACGGAGCCAGCCAACGTTGTATACGTTGTCATTATAAAACTACACATACAGAGAGTTTTTAATAGAGCATAAAACGaaacaaatatcaacatctactGTACAACCATAAATTATGACATTTGAAAATACTTTTACGGAAAATAATAACATGATAtcgattaaaataaaaatatcataatatatacattaaaatatagaccatttcaatattgaggtaaagtattatattcgcacattcagactttctccttaatcaTTTAATTACAGAAAATGATTCTTTGCACatactaaatagtgaaatcatataatcagccaatgaaaatcaaagtacaacattacttggtcaaataaatagtgccaaTGTTGTTCTagagtcatacttgcatgtgattccAGACTGAATATttatggtaaacagtatagggagcgagtcacaagttgtcattAAACGAATGTggtaatataaaaccaactttacctcaatcatttCTGTGTGGTGATGACATTGGCTCGTAAACATGTCCTGCTTcttgtcaaactattttataactgtaacaagaggcgacTCAGTCATAACTTTACATCAAAATAgcgatcataacattatttatcaatatgttgaACTTATTGGATTTTGGAAGATatgtaaatgaaaaatgtaatttttttaggactgttgttattgtttacatccctcaaaatggtctataaaaagGGGTAAACACCCTAAAATGTTAATGTGaacttaaagaaaataaatacagactTGATGcatgataatatttttgttttgcatttcagGTCCGTCATTTTTCTTTAtataattaaactgaaatgcataAAAAGTAACAGTCGAtatacagttggtcagaattattagcccccctgtattattagcacccctgtatatttttcccccaatttctttttaacggagagatttttcaa
>TCONS_00036149
atgcccctctctctctctctttctaccCTCCAGGTGTTTGATATCAGTCGATATCAGGAGTCACTGGCTGCTTACTTCGTGCTGGGTACCCATGAGAACATTAACCAGATAGTGGAGATCCTTCTGGGGGATACGCGAGCGTACGTGTTCTTCGAGAGGAGCCATGGCGATATGCACTCTTTCGTTCGCACTTGCAAGAAGCTGCGAGAGGAAGAGGCTGCCAGACTTTTCCATCAGATAGCATCAGCTGTGGCGCACTGCCACGACAACGGCCTGGTCCTCCGAGACCTCAAGCTGAGGAAGTTCGTCTTCAAGAATGAGGACAGGAACCATGTAAAGTTGGAGAGTCTCGAGGACACGTTCCTCCTCGAAGGGGGCAATGATTCCCTCTCGGACAAACACGGCTGTCCTGCTTACGTCAGCCCTGAAATCCTCAATGCAAACGGCAGCTATTCGGGAAAGGCGGCGGACGTGTGGAGCTTAGGAGTGATGCTGTACACCATCCTGGTTGGCCGGTATCCCTTCCACGATGTGGAGCCAAGTTCGCTGTTCAGTAAGATCCGCCGCGGGCAGTTTAGCATCCCAGAGACGCTAACACCCAAAGCGCGATGCCTGATTCGTAGCATCTTGCGGAGAGAGCCCGCCGAGCGCCTCACATCCCGAGAAATTCTGGACCATCCCTGGTTTTTGGCCTCCATCACTCCGGCCGTCAACCATGGAAGAAACGAACGGGAGTTGGACCAAATGGTACCAGAGGCCAACATGGAAGAAGAACTAGAACAGTTCTTTAGCTGAGCACAAACTCGTCAAGACATTTATGCCACGTTCTTTTAGATTATCTGATAAACAAAAACGCAAAATACACTCATATTACAATGGTGTCTATCGTTATTTCTCATTCCGCGGAGAGATGTGGACTGTTTCTGGTGAAGCTACGACTTCTGGACGAAGCGAAATGCTAATGGCGTTGAGTGATGTAGCAAGACTTTTTTGGTTTATTGTTTAGGTTTTTACGTGGTGCTCACGAGTCGCAGTAAGCTACGAAACATGCATTACAGCACAGGAGAACGCAGCCAAGGAACAAAGAAAATATCAGGCAAAACAGCTCCTGTTTCCTGCGCCAAGTTGTCGACCGTGTTTTCTTTCTTCCTCGAATGCAGTTTGTTGTTGGttgcgtcttttttttttttttggttcattcTAAGAATATCTAGCCTTATCTCACGAGGAAGCAAAACtattttacgctttgtcagtTTAAGGGCTAATTTGTAttagttcagtcatacgaaaatgtatgacTATTAAAAGGAGGTGTGACACCAAATGCCACCCTTAAACCCAATCATAATTGgcggatgagcaaatcatactaaattgtacagaTCAGATCTACAATTTTATACGAATTACCCTCTAAATCAAAAATTTACGAATTGGCatggtcagtttagtggctaattcatacaaattcatgagtcagttgtacgaaaatgtacgatttttgaAGGGAGCCGAGGCACCAAactccatccctaaacccaatcgttactggggggatgagcaaatcgtactaaattgtatgaatgaggttgcatgaattagccactaaaccaaCAAATTACGAATTAGCATAGTCAGTTTATTGGGTAATTCATATGAGataagtcatacaaaaatgtacaatttataaaAGGAGGCTTGGCACCAAACTCAACCCATAAACCCAACTATTATTGGGGGATCagcaaatcgtacaaaattgtacaaatgagatcatacaaattagccactaaatcaagttGCGAATTAGCATgctcagtttagtggctaattcttacaaattcatgagttcagttgtacaaaaatttaagatttttaaaaggagccGTGGCACCAAACTCCGTCATATATATAaaccgtcattggggaatgagcaaattgtactaaattgtttGAATGAGGTTATATGAATTTatacgaatcagccactaaatcaacAAATTACGAATTAGCatagtcagtttagtggctaattcatacaaaatcATATAAGTTCGTTAGTACGAAaagtatgaatttttttttttttttaaggagccATGGCACCAAAtgccacccctaaacccaactgtcattggcagatgagcaaatcatgctaaattgtacaaataagatCTACAAAttcattcgaattagccactaaatcaacaagttatgaattagcatggtcagtttagtggctaattcatatgacaTAAGTCGGTAGTACgaaaagtatgatttttaaaaatgtcacccctaaacccaaccatcatcatgGGTTGAGCAAAACGTATTAAATTGTTCGAATGAGAtctatgaattcatacgaattagccactaaatcaaaaagtttcgaattgctgtgagattgttgGAATATCCGCAAACGTCGACAGCCATCCTCTGTGACCTttagtttttacattaaaaaaaaaaaagtttgtgttgCATTAAGCTGTTCCTTTTACTATTATTGCTGCTTTTTCCGCTCTAACGTTACTGAAACGTTCTCCTTTCGGAGAATTTAAAGAAAACGTCAAGCACTTGACTCGCCTAGGCTTGGAGATGCTCTCTAAACTAGTGTCATCTATTTAACTTTTAGTTAGGTTTTTCCTTTTTGCTGGagcaaaatgtaactttttttattttatttataacttaacaactactatatttaaaaaaaggaatacATGCAGGGTTTTTTGGTTAACCGCGAATATTGTAGGCAATACATTTGACACAGGACAGGTTTGACTTTTTGCATCAAAGTTCGTCCCAAGTTGGAAAGTCTACGATTTAAACGTCAGTGCCAGTAACTGCGCACCCCGAACTcacgtttttatttttcttctttttttttttttttggtttgtttttgcatTTGACTCCATAAATATTAGACGATATTGCTACGACTACAAGGTCTCGAGTACCTCTACTGCCTGCATAGGTCTGTGAAATGATCATGTTTTGAATGGGTACGTGTAGACTTGTTTCGTCGTATATTATTGTTACTTGAAATCGTGATTTATATCTAGTCAATGGCATGTGCCCTTTGAATGCTTTAGCCTGCCTAGCAAGAGGggagtttgttttttaaaatatatatataaatataaatatattttattttttccttgaAGAATATTACGAAGGATTTACTAGGAGTCCAATTGcgctttttattttagtttgttttattttttgcttgtttgttttcttcTGGTCATTGTGCTTTGCCCTTTTTCTGTAGAAGGAACTTGCCTACTTAAGTTGGTGCTGATTAGGTGCTAAATttgaaggattttttttctgttcctttattattattttttcctcatgTTTTCGAGGGGAGGGGGGAGTGCATGGTGGGATTATCTGCCTCAGATGCTCTGATTGTAATGTAACAAATTTTTGGTGTTTTGTCCAGATTTATTCAGTAAATAAATTGTGAACTGCACACTGAACGCTGTATCTTTTTATGCAATCTTTAAAGGACATAAatagacaataaaacaaaacaaagaaaaggaAATGTTTTTATGGTGGAAACGAATTTGAAGTGTCATTAATATGCTTGCATGGAGTtacagatttattatttattatttatatttatttaatttagcaaaaaaaaaaaaaaactgtatatgtgtataggacgggtgggcaaactcggtcctggagggctggtgtcctgcacagtttagctccaacactaatcaaacatacctgaacatgctaatcaaacacacctgaacatgctaatcaaacacacctgaacatgctaatcagtgtcttcaagatcactagaaatctttAAGCAGCTGTGTtcgattagagttggagctaaactgtgcggccctccaggaccgagtttgcccacccctggtataGGATGATCTCAAACCTTTCACTCAAcattcacaaaacaaaaattaattttattcaaacattttaagaattgtaaaactgcacaaatacaatggtttaaaaaaacagatttaattaaatgaacatgctttccaaaaatatttttaattttaagaaaaagtcttagattttttattcataatcattatatattgttaatatatttatattttggacGGCATTATGCTACAGTGGacagcatgatcgcctcacagcaacaacgtctctggttcgagcctcgcctgggtgagttggcatttctgtttgcatgttctccccgtgttgatgtagatttcctccaggtgctccggtttccccccacagtccaaagacatgcgctatttgtaaattgggtaagctgaattgtctgtagtgtatgtgtgtgaatgagtgtatgggtgttttcctgtgacgccactggctcgcatggttcaggattggtagagctacgcatcgatgaatttgctctttagtgtttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactgaacttaaacactaaaaaactgaactacactgttccagttactacgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaattaagctgaattgaattgacgtgttgcagctggaagggcatccactgcgtgaaaagttggcggttcattctgctgttgtgacCCCTAATTAATGATGAGATCactctgaaaaagaaaatgaatgaataaatatattttgtaaatatacgttttgaatatattttttttcagaaaatgtacACAATATTTGCATAAGCCTAAGTTATATTTTAAGAATTATACATCTGCACAAGAACCCAGATTTTAACTACTTTTGTTTAcaaacttcacaaaaaaaaaatgcataaaaggtgtgtgtgtgtgtgttaggggtgTAACAGGTCATGTTTGATCTGTGAttcgtacggatcacaacccacggttaCGAACACATGACTcgcggatta

Function

GO:

id name namespace
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-091207-3 Predicted to enable mitogen-activated protein kinase kinase binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and regulation of MAP kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human TRIB2 (tribbles pseudokinase 2).

Ensembl:

ensembl_id ENSDARG00000068179

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036967 False 2463 lncRNA 0.38 3 45368645 45405742
TCONS_00036149 True 4991 mRNA 0.39 2 45404656 45423498

Neighbor

gene id symbol gene type direction distance location
XLOC_018368 klhl29 coding downstream 306131 44799375 ~ 45062514 (-)
XLOC_018369 LO018355.1 coding downstream 456314 44912213 ~ 44912331 (-)
XLOC_018367 ubxn2a coding downstream 791696 44566939 ~ 44576949 (-)
XLOC_018366 mfsd2b coding downstream 811608 44507667 ~ 44557037 (-)
XLOC_018365 NA coding downstream 872400 44464345 ~ 44496245 (-)
XLOC_018371 NA coding upstream 128013 45551511 ~ 45560420 (-)
XLOC_018372 napbb coding upstream 220325 45643823 ~ 45661053 (-)
XLOC_018373 gpcpd1 coding upstream 245678 45669176 ~ 45722895 (-)
XLOC_018374 trmt6 coding upstream 330825 45754323 ~ 45772306 (-)
XLOC_018375 fermt1 coding upstream 352437 45775935 ~ 45812152 (-)
XLOC_017928 CU539064.1 misc downstream 35314944 10053405 ~ 10053701 (-)
XLOC_018362 NA non-coding downstream 1007249 44345987 ~ 44361396 (-)
XLOC_018363 BX664630.1 non-coding downstream 1019588 44348942 ~ 44349057 (-)
XLOC_018361 NA non-coding downstream 1092657 44123803 ~ 44275988 (-)
XLOC_018376 NA non-coding upstream 397042 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding upstream 429316 45852814 ~ 45854934 (-)
XLOC_018378 NA non-coding upstream 483649 45907147 ~ 45983660 (-)
XLOC_018379 NA non-coding upstream 618823 46042321 ~ 46042988 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_04898116_04905715 TRIB2 coding CI01000029 null 4897624 ~ 4905811 (-)
rainbow trout (Oncorhynchus mykiss) G703179 LOC106571747 non-coding NC_048572.1 CM023226.2 36762205 ~ 36767971 (-)