XLOC_018372 (napbb)


Basic Information

Item Value
gene id XLOC_018372
gene name napbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45643823 ~ 45661053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036150
AATAAACGCAACGACAGTAATCCCCCGCTGCCATAGTGACAGACCGAGAGAAGCGAGCGGAGAAACCATAATATAATTTACCACTTACCTATTCATTTATCTACAGAAACAATGGACAACTCCGGCAAAGAAAAGGAGGCTATTCAGCTCATGGCTgaagccgacaagaaagtgaaGTCTTCCGGCTCTTTTTTAGGAGGAATGTTTGGAGGAAATCACAAAGTGGAGGAGGCTTGTGAGATGTACGCCAGAGCCGCCAACATGTTCAAAATGGCCAAGAACTGGAGTGCTGCAGGCAATGCTTTCTGTCAGGCAGCCAGAATTCATATGCAGCTTCAGAATAAACACGATTCTGCCACCAGCTACGTTGATGCTGGAAACGCCTTCAAGAAAGCAGATCCACAAGAGGCTATCAAGTGCTTAAACGCAGCAATTGATATTTACACAGACATGGGAAGATTCACCATCGCAGCAAAGCATCACATCACAATCGCTGAGGTTTATGAGTCGGAGCTGGTGGACATCGAGAAGGCGATTGCACATTATGAACAAGCCGCTGACTATTATAAAGGAGAGGAATCAAACAGCTCTGCAAACAAGTGTCTGCTAAAGGTGGCTTCATACAGCGCTCAGTTAGAGCAGTACCAGAAAGCAATAGAGATTTATGAGCAGgtTGGAAGCAACACCATGGACAATCCCCTTCTGAAATACAGCGCCAAAGAGTATTTCTTCAAAGCTTCCTTGTGTCACTTCATTGTAGACGAGTTGAACGCTAAGCTCGCCATTGGAAAGTACGAGGAGATGTTTCCAGCCTTCTCAGACTCAAGAGAATGCAAACTGCTGAAGAAACTTCTAGAGGCTCACGAGGAGCAAAATGCAGAGGCTTTCACAGAAGCGGTGAAGGAGTTTGACTCTATCTCCCGCTTGGACCAGTGGCTCACCACCATGCTTCTCCGGATCAAGAAGACCATTCAGGGCGACGAGGGTGACCTAAAATGATCTGGACGGTGGGGAAACCCACTGCATGGTGCCCTCCTTCCCCACTTCCATTTCACATCTCTTCTGTGCAATGGCCAAGTCCAGGTTTCCCAAAAACAGTATGTCAAAAAGCATTGCTGCAACATTTCTAGAGAATATACTTCTAAGCCTGTACTGTTACATTGATATCCAGTTATATAATATAGCACATATCAAACATTTAGCACTCCAGTTCGAAAAGatctgctccggtttccctggGTATTTCTGGAAACGCGGCTTCAAGGGAAACTCAATGGGGATTTGAGATGTTCCTCGTGTTTCTTTTGCAACAGCCGCTGAATTGCGATGTGCTAGAGCTGCATGAATTGTACAGATGTCATTAAAAGTCTGTGCAGCAGGAA
>TCONS_00036151
GGTTAATAAACGCAACGACAGTAATCCCCCGCTGCCATAGTGACAGACCGAGAGAAGCGAGCGGAGAAACCATAATATAATTTACCACTTACCTATTCATTTATCTACAGAAACAATGGACAACTCCGGCAAAGAAAAGGAGGCTATTCAGCTCATGGCTgaagccgacaagaaagtgaaGTCTTCCGGCTCTTTTTTAGGAGGAATGTTTGGAGGAAATCACAAAGTGGAGGAGGCTTGTGAGATGTACGCCAGAGCCGCCAACATGTTCAAAATGGCCAAGAACTGGAGTGCTGCAGGCAATGCTTTCTGTCAGGCAGCCAGAATTCATATGCAGCTTCAGAATAAACACGATTCTGCCACCAGCTACGTTGATGCTGGAAACGCCTTCAAGAAAGCAGATCCACAAGAGGCTATCAAGTGCTTAAACGCAGCAATTGATATTTACACAGACATGGTAAGATGTTTTTGTAGCTGTCAAAATCATATAATGTTGAGCCAGGCTGTTCTATTCCTGTACTGTGTTTGATCTGTGAACATTTTAAACGGCTACACACCAGCTAAACTCCCCCAGTAACTGTAATAGGACAGTTAATCATCTAGTCCCCATTCCAAAATCTAGTCTCTAAAGGTGGC

Function

symbol description
napbb Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Acts upstream of or within photoreceptor cell maintenance. Predicted to be located in membrane. Predicted to be part of synaptobrevin 2-SNAP-25-syntaxin-1a complex. Predicted to be active in vacuolar membrane. Is expressed in head; tail bud; telencephalon; visual system; and yolk syncytial layer. Orthologous to human NAPB (NSF attachment protein beta).

GO:

id name namespace
GO:0035494 SNARE complex disassembly biological_process
GO:0006886 intracellular protein transport biological_process
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0010807 regulation of synaptic vesicle priming biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0070044 synaptobrevin 2-SNAP-25-syntaxin-1a complex cellular_component
GO:0016020 membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005483 soluble NSF attachment protein activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2132 Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Acts upstream of or within photoreceptor cell maintenance. Predicted to be located in membrane. Predicted to be part of synaptobrevin 2-SNAP-25-syntaxin-1a complex. Predicted to be active in vacuolar membrane. Is expressed in head; tail bud; telencephalon; visual system; and yolk syncytial layer. Orthologous to human NAPB (NSF attachment protein beta).

Ensembl:

ensembl_id ENSDARG00000069101

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036150 False 1382 mRNA 0.46 11 45643823 45661049
TCONS_00036151 True 636 mRNA 0.44 4 45651137 45661053

Neighbor

gene id symbol gene type direction distance location
XLOC_018371 NA coding downstream 83403 45551511 ~ 45560420 (-)
XLOC_018370 NA coding downstream 220325 45368645 ~ 45423498 (-)
XLOC_018368 klhl29 coding downstream 581309 44799375 ~ 45062514 (-)
XLOC_018369 LO018355.1 coding downstream 731492 44912213 ~ 44912331 (-)
XLOC_018367 ubxn2a coding downstream 1066874 44566939 ~ 44576949 (-)
XLOC_018373 gpcpd1 coding upstream 8123 45669176 ~ 45722895 (-)
XLOC_018374 trmt6 coding upstream 93270 45754323 ~ 45772306 (-)
XLOC_018375 fermt1 coding upstream 114882 45775935 ~ 45812152 (-)
XLOC_018376 NA coding upstream 159487 45820540 ~ 45891765 (-)
XLOC_018377 NA coding upstream 191761 45852814 ~ 45854934 (-)
XLOC_017928 CU539064.1 misc downstream 35590122 10053405 ~ 10053701 (-)
XLOC_018365 NA non-coding downstream 1147578 44464345 ~ 44496245 (-)
XLOC_018362 NA non-coding downstream 1282427 44345987 ~ 44361396 (-)
XLOC_018378 NA non-coding upstream 246094 45907147 ~ 45983660 (-)
XLOC_018379 NA non-coding upstream 381268 46042321 ~ 46042988 (-)
XLOC_018393 NA non-coding upstream 496576 46157629 ~ 46159156 (-)

Expression


Co-expression Network