XLOC_018389 (taar1b)


Basic Information

Item Value
gene id XLOC_018389
gene name taar1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46127591 ~ 46128590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036172
AATGGATCTCTGTTATGAGGCGATGAATGGATCCTGTTGGAAATACGTACGACCGCATGCCATCCACGTTCCGATGCTCATCGCTATTATGTTGATCATCTCAATGACCTTCATTGGGAATCTACTGGTCATCATCTCCATTGGACATTTCAGGCAACTCCACACACcaacaaaccagctgattctGTCTCTCGCCCTGTGTGACTTTCTGATTGGGTTGTTTGTGATGCCTCTGAGTGCTGTTCGCTCCATGCAGGGCTGTTGGTACTTTGGCGAATTCCTTTGTAAGTTACACACATGCATTGACATCACTCTCAGCACCTCTTCCATTTTCCATCTTGTGAGTGTGTCTGCTGAGCGCTTTTGTGCTGTGTGTGGACCGTTAAGGTATCGTTCCTGTTTTGGATTGTCAACGGTGCTGTTGATGATCTCCATCAGCTGGTTGATCCCTGGAATATTCGCTTACGTGATGACTTTCCTGGAGATCAACATCCACGGAGGCAAAGACTTCTACGATGCTCATGTACGCTGTGTGGGAGGATGCCATGTGTTTTTTAGTCACGGTCCGGCAGTGTTCACCTCTGTGTTTTCCTTCTACATCCCTGGCTTCATCATTGTTGTCATCTATTCTCGAATCTACATGGTCGCCCGAAACCAGGAGAGATCTATTCGTCTTCAGTTAAACCAGTTGAGGCGGGTTTATCCATCAAGAGATGTGCAGCTTCAGACACGCAAGGCAACTGTCACCATTGCTATTGTGGTTGGAGCTTTCCTGGTTTGCTGGACTCCCTTTTTTCTGTGTAATATCCTCAATCCTTTTATTGGCTACGCGACACCGCCAATGCTGATTGATGTGCTTATGTGGTTTGGCTATGCTAATTCCACGTTAAATCCTTTTATTTACGCATTCATGCATTCCTGGTGTCGAAAAGCGGTAAGGATTATCGTAACtggagaaatatttaaaaacaacagcagCAGAAAAGACTTGTACACTTAA

Function

symbol description
taar1b Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Orthologous to human TAAR1 (trace amine associated receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-58 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Orthologous to human TAAR1 (trace amine associated receptor 1).

Ensembl:

ensembl_id ENSDARG00000089000

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036172 True 1000 mRNA 0.45 1 46127591 46128590

Neighbor

gene id symbol gene type direction distance location
XLOC_018388 taar12i coding downstream 13124 46113445 ~ 46114467 (-)
XLOC_018387 taar12c coding downstream 22472 46104102 ~ 46105119 (-)
XLOC_018386 taar12b coding downstream 25943 46100634 ~ 46101648 (-)
XLOC_018385 taar12a coding downstream 41751 46084808 ~ 46085840 (-)
XLOC_018384 taar12f coding downstream 52897 46073680 ~ 46074694 (-)
XLOC_018390 taar10b coding upstream 8510 46137100 ~ 46138110 (-)
XLOC_018391 taar10d coding upstream 17128 46145718 ~ 46146729 (-)
XLOC_018392 taar10c coding upstream 25552 46154142 ~ 46155153 (-)
XLOC_018393 NA coding upstream 29039 46157629 ~ 46159156 (-)
XLOC_018394 taar10 coding upstream 35748 46164338 ~ 46249185 (-)
XLOC_017928 CU539064.1 misc downstream 36073890 10053405 ~ 10053701 (-)
XLOC_018379 NA non-coding downstream 84603 46042321 ~ 46042988 (-)
XLOC_018378 NA non-coding downstream 143931 45907147 ~ 45983660 (-)
XLOC_018376 NA non-coding downstream 235826 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding downstream 272657 45852814 ~ 45854934 (-)
XLOC_018371 NA non-coding downstream 567171 45551511 ~ 45560420 (-)
XLOC_018405 CU571074.1 non-coding upstream 754770 46883360 ~ 46883487 (-)
XLOC_018406 NA non-coding upstream 821180 46949770 ~ 46953118 (-)
XLOC_018407 CU571074.2 non-coding upstream 828501 46957091 ~ 46959768 (-)
XLOC_018409 FO904915.1 non-coding upstream 949389 47077979 ~ 47078093 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_05229020_05230030 TAAR1B coding CI01000029 null 5227179 ~ 5230139 (-)