XLOC_001839


Basic Information

Item Value
gene id XLOC_001839
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4289705 ~ 4299850 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005812
TACTTAAGATGATCTATCCCATCAGGGGTCGTAGGGGCATTATATCGCCTCATGTATTCGTGCATCTCTGGGAAGCTTTTTTTCACATAGTCCTCAGCGCTGCTCTCCCGAACGGTTCCAAAGCGGAAACCTTGTGATGGATGATGAAGCTTGAAAGGCAAGAGGACCATTATTATCAACCATAATGTATATACTTTATATCTCTAACAATTGGTAAGCCTGAAGGGCAGTTTGACTCCCTTTAAAAATTACAACCGCAAGTTACTCTTACCTTGGGATCATGTATACCTGAGAGTTGCTCGTAGGTTTTCTCACCAACCATTACAGCTGCGAGATTTGCTGTGTATGTTGACAGGCAGAACAGGCAGAATATGGCCCAGAGGTTCATGAGGAATCTGCCGGTCCAACATTTAGGTGGCTTAATGGCGGCAGTTCTGCCGAATAAGATTGCGTAGCAAACATTTAGCGCTGAGGAGAAAGAAAAGACACGATCCCTGTTCCTCCCCCTCGGGGTCATTCCGAATGGACTTTTCCATTCATATAAAGTCAGGAACACAGCCGTGACATGTAAAGACACAAATATCCCCAGCCACATACTCCAGTGCAGGGGCCACATGAAGGCTCCAATAGGTGCGGCAGTATCCCTAGTCCTGACAAGGATTCCCAAACTGGTGGAAAAGAAAGGACTGGTGAAGTCAATCACCTGACTGCGTGCTGAGTTGATGCTAAAAGAAGTCACAGCCAGATGTGCTGCTCCGCTCATGAGATCCCCGACAAGCCCTGTCCACCGACCATTCTTGTACGCTCCATACTTTCCATCTCCAACAATGTAGAGGTCAAAATCAAACCCCATGTCCTCTGCCAGCTTCTCCAATAGATCAATACAATAGCCGTAGCAGCATTTCTTAAACTCCAACGGGACAGTGTCATTGGCACCCTGCAGACCCTGAAAAAGACTTTCCAGTAAGGCTGTATCATTTGTTAGGGGGTCAAGGCACAACTGGCCAGCCGGGCACAAACCTTCGTCATCAACATCTCGAGTGAAGACAAACGGGTGTTCTACTAGAGTGACGACTCGTAAGTGTAGACGTGAGGAATGGCGCCAGTCTGCTCCTGGCTGGGACCGTCTCTTATTGGGCCAAACACCATAATCCATAACCACCTTGCCATGCTTCCAGCTGCCTAGACGGGTCCACATGGGCTTCCCTATTGGGTCATGTTGTAGATTCCATATGAAGTGATGGCTTTCAGAGATGATGGTGGATTCCTCTTGAACACTGATGCAGCCGCTCAGGCCGTCAAAAGAAGTGCTGGCCATGTATCTGGGAAGGAAGGTTCCTGATGTGAGATTTTTAGCCTCAAGCCTTGCCAGGCAGTTTGTGGTGCCAGGAATCAGTGCCAGCTGTGGAGAGACAGTGGCGGCAGATCCCACCGCTCGCGCCACCAGCTCCAAAGCATCCTGGACATAGTGATCCAGCGAAGGCTCGCCCATACGCCCGTGTGCAAGAAGTCCCATGGGGAGCCCCTCGGTCCGTAATTCCTCCACATTTTGAGAGTCTCCTATAATCCAGTGGTAATCAGGAAGAATCAAACCAAACTTTGCAATAGTGGTGAAGATTCTCCTAATATCCCTGATGTCACATCCGAAGGTCACTAAGGTAGACGTCGAGTCCTTGATGGACTCCAGCTGGGCTTGCAGGAATATGTGAAAGTCGTTTTTGGAGCTGCTGTTGGTGGAAATCTTTAGGACGGTTCCCAGGTGAAATTTGGAGTTGTTGTGGAGCAAGAAAACAAAGTCTGATATGTTCATCTGTTGACACATCACCAGACTGACATCGAACCAGTTATTCATGGACAGCAGGGAGAAGATGAGATTGGCTTGAGAGGTTTGGGGATTTTGCATGGCCATCTGGAAATGAAGTAAGTTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005812 True 1929 lncRNA 0.48 2 4289705 4299850

Neighbor

gene id symbol gene type direction distance location
XLOC_001838 plppr1 coding upstream 30431 4235998 ~ 4259274 (+)
XLOC_001837 mn1a coding upstream 176869 4095917 ~ 4112836 (+)
XLOC_001836 pitpnb coding upstream 204489 4046448 ~ 4085216 (+)
XLOC_001835 TTC28 coding upstream 249919 3875716 ~ 4039786 (+)
XLOC_001834 NA coding upstream 431820 3857067 ~ 3857885 (+)
XLOC_001840 NA coding downstream 15113 4314963 ~ 4318863 (+)
XLOC_001841 NA coding downstream 35342 4335192 ~ 4341646 (+)
XLOC_001842 dre-mir-430a-1 coding downstream 193427 4493277 ~ 4493358 (+)
XLOC_001843 plk2a coding downstream 200093 4499943 ~ 4508530 (+)
XLOC_001844 palm2akap2 coding downstream 506473 4806323 ~ 4831218 (+)
XLOC_001830 CU570980.1 non-coding upstream 880805 3408783 ~ 3408900 (+)
XLOC_001827 NA non-coding upstream 1019887 3262578 ~ 3269818 (+)
XLOC_001823 NA non-coding upstream 1310201 2977535 ~ 2979504 (+)
XLOC_001815 FP085363.1 non-coding upstream 1601024 2688565 ~ 2688681 (+)
XLOC_001845 NA non-coding downstream 510033 4809883 ~ 4810251 (+)
XLOC_001848 NA non-coding downstream 661965 4961815 ~ 4963300 (+)

Expression


Co-expression Network