XLOC_018391 (taar10d)


Basic Information

Item Value
gene id XLOC_018391
gene name taar10d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46145718 ~ 46146729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036174
AATGGACATCCGGATCAACATCAGCCACAATGGAATCTGGGACAAACCTTTCCTTTGTTATGAGTTTAGTAACAGATCTTGTCAGAAGTTTGTTTATTCTTTGGAGACTCGAATATTGTTCTACATTCTTCTTAGTGCCTCTTCAATAATCACAATCATAGGAaacctgctggtgatcataacgGTCGTTCATTTCAGGCAGCTTCACACACCGACTAACTACCTCATCTTGTCTCTGGCTGTGGCCGATCTGCTTGTCGGAGGAGTTGTGATGCCTCCCAGCATGCTGCGCTCCATCGAGACCTGCTGGTATCTGGGAGATTTGTTCTGTAAGATCCACAGCAGTCTTGATGTCACATTGTGCACCGCTTCAATCCTAAACCTCTGCATCATTTCTTTAGACAGATATTACGCCATATGTCACCCGTTCCAATATCACAGTAAAATGACGTCGCTTGCCACATTGGTTATGATTATCATCTGCTGGACTGTTTCGGCTGTTCTGGGCTTTGGCATGATCTTTATGGAGCTGAATATTCTCGGTGTTGAAGATTTTTACTATGAGAACATTAAATGTGATGGAGGATGTACACTGTTTCAGAGTAAAACCGGAGGTACTGTGTTCTCACTGATCTGTTTTTATATTCCTGCTTTAGTCATTCTCTTTGTGTATCTTAAAATCTTACATGAAGCTCAGCGGCAGGTTCAGGCCATCCAGAGTGTGAATTCTGAACTGAAGAAAGAGGGAAAAGCCAATAAGACTTTAGCCATCATCATTGGAGTGTTTCTGACTTTGTGGGTTCCTTTTTTCCTCTGTAATCTCATTGATCCATTCATTGGTTACTCTGTTCCTCCACTGCTGTTTGACTTGTTCTATTGGATCGGATATTATAATTCCACCTGTAATCCCATAGTGTACGCCTTCTTTTACAGCTGGTTCAGACATGCTTTCAGAGTCATTCTGTCCAAAGCAATATTTCAGACAAATTCTTCAAGAACTGTGCTGTTGTAA
>TCONS_00036975
ATGGACATCCGGATCAACATCAGCCACAATGGAATCTGGGACAAACCTTTCCTTTGTTATGAGTTTAGTAACAGATCTTGTCAGAAGTTTGTTTATTCTTTGGAGACTCGAATATTGTTCTACATTCTTCTTAGTGCCTCTTCAATAATCACAATCATAGGAaacctgctggtgatcataacgGTCGTTCATTTCAGGCAGCTTCACACACCGACTAACTACCTCATCTTGTCTCTGGCTGTGGCCGATCTGCTTGTCGGAGGAGTTGTGATGCCTCCCAGCATGCTGCGCTCCATCGAGACCTGCTGGTATCTGGGAGATTTGTTCTGTAAGATCCACAGCAGTCTTGATGTCACATTGTGCACCGCTTCAATCCTAAACCTCTGCATCATTTCTTTAGACAGATATTACGCCATATGTCACCCGTTCCAATATCACAGTAAAATGACGTCGCTTGCCACATTGGTTATGATTATCATCTGCTGGACTGTTTCGGCTGTTCTGGGCTTTGGCATGATCTTTATGGAGCTGAATATTCTCGGTGTTGAAGATTTTTACTATGAGAACATTAAATGTGATGGAGGATTTACTCTGTTCCTCCACTGCTGTTTGACTTGTTCTATTGGATCGGATATTATAATTCCACCTGTAATCCCATAG

Function

symbol description
taar10d Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human TAAR1 (trace amine associated receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-97 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human TAAR1 (trace amine associated receptor 1).

Ensembl:

ensembl_id ENSDARG00000111108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036174 False 1012 mRNA 0.42 1 46145718 46146729
TCONS_00036975 True 660 lncRNA 0.43 2 46145816 46146728

Neighbor

gene id symbol gene type direction distance location
XLOC_018390 taar10b coding downstream 7608 46137100 ~ 46138110 (-)
XLOC_018389 taar1b coding downstream 17128 46127591 ~ 46128590 (-)
XLOC_018388 taar12i coding downstream 31251 46113445 ~ 46114467 (-)
XLOC_018387 taar12c coding downstream 40599 46104102 ~ 46105119 (-)
XLOC_018386 taar12b coding downstream 44070 46100634 ~ 46101648 (-)
XLOC_018392 taar10c coding upstream 7413 46154142 ~ 46155153 (-)
XLOC_018393 NA coding upstream 10900 46157629 ~ 46159156 (-)
XLOC_018394 taar10 coding upstream 17609 46164338 ~ 46249185 (-)
XLOC_018395 bmf2 coding upstream 204877 46351606 ~ 46362606 (-)
XLOC_018396 rmdn3 coding upstream 295553 46442282 ~ 46467280 (-)
XLOC_017928 CU539064.1 misc downstream 36092017 10053405 ~ 10053701 (-)
XLOC_018379 NA non-coding downstream 102730 46042321 ~ 46042988 (-)
XLOC_018378 NA non-coding downstream 162058 45907147 ~ 45983660 (-)
XLOC_018376 NA non-coding downstream 253953 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding downstream 290784 45852814 ~ 45854934 (-)
XLOC_018371 NA non-coding downstream 585298 45551511 ~ 45560420 (-)
XLOC_018405 CU571074.1 non-coding upstream 736631 46883360 ~ 46883487 (-)
XLOC_018406 NA non-coding upstream 803041 46949770 ~ 46953118 (-)
XLOC_018407 CU571074.2 non-coding upstream 810362 46957091 ~ 46959768 (-)
XLOC_018409 FO904915.1 non-coding upstream 931250 47077979 ~ 47078093 (-)

Expression


Co-expression Network