XLOC_018394 (taar10)


Basic Information

Item Value
gene id XLOC_018394
gene name taar10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46164338 ~ 46249185 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036177
AGTTGAAGTGAAGCAGCAGCTTGACTACACGAGGGCCAGCATATTCGAGGAGGATTCATCTTTACGGCTTGTCTAACAGCGTGAAATTGACTTGAACGAACATCAAAAGAAACTGAAATAATGTGAGGAAGAATAAATGCTGATCAGTGGTTTGTAAATACCTGGTGACCTGCTGCTCTTTGCAGCTGTTCTGTGGCTGACTGCACACTGATTTCTGCGTTTGATACGTTGGCCTCTATACTGTCTGTAGATGGAGAAAAACAGAGACAATGTCCAGCCAGAGATGGACCTAAGCAATTCAACAGCGACTCAATTTGGGCTTGTTCTCTGCTTTGAGTCGATCAACAACTCCTGTGTGAGATATATCTACCCATCTGAGATCCAACTTATGCTCTACTTGTTCTTCAGTGCCATAGCGCTCACCACAGTATGCGGAAACCTGCTGGTCATCATAGCCATCCTTCATTTCAAGCAGCTTCACACACCGACTAACTACCTCATCTTGTCTCTGGCTGTGGCCGATCTGCTAATCGGAGGAGTTGTGATGCCTCCCAGCATGCTGCGCTCCATCCAGACCTGCTGGTATCTGGGTGATTTGTTCTGTAAGATACACAGCAGCGTTGATATTATGCTATGCATCGCATCTCTTTTGCACATATCCTTTATTTCTATCGATCGCTATTATGCTGTATGTCACCCTCTCCAATATCGAAGTAAAATCACACCGCCGGTTTCCTTCACGATGATTTCTCTAAGCTGGGGTCTGGCGGCCTTTGTTGGATTTGCGATGGTATTTCTACAACTCAATATTATGGGATcggaagacttttattttgataatgtcGCTTGTAATGGAGCTTGCATTATATTTCAAACCCCTGCAGCAAGTATTACGTCTTCATTCCTTGCTTTCGGCCTTCCTGCAGTAATCGCTGTCAGCATATATCTAAAAATTCTACTTGTTGCACGAAGACAGTCCAAATCTATACAAAGTGTAAGCAAGAAAAACAGCTTATCTGTGAACAAAAGTGAGGGGAAGGCCACCAAAACGCTGGCTATCATCATGGGGGTGTTCTTTATCAGCATCTCACCTTTTTTCTTCTGCAATTTAGTGGATCCGTTCATCGATTACACAATATCACCGGCTGTTTTTGATGTGCTTTTGTGGATTGGGTATTTTAATTCTCTGTGCAACCCTTTTGTTTACGCATTCTTTTATAGGTGGTTTAGAAAAGCTCTAAGAATTATTCTTCTGGCCAAAATATTTGTTGTGAATTCTTCACAGCTTGACTTGATGGGTCGACATGAGTAGGGAGAACAGTTTCGTGTAAATAGTGAtgcatgtaaataaacagaaatataatGTT
>TCONS_00036977
GATGGACCTAAGCAATTCAACAGCGACTCAATTTGGGCTTGTTCTCTGCTTTGAGTCGATCAACAACTCCTGTGTGAGATATATCTACCCATCTGAGATCCAACTTATGCTCTACTTGTTCTTCAGTGCCATAGCGCTCACCACAGTATGCGGAAACCTGCTGGTCATCATAGCCATCCTTCATTTCAAGCAGCTTCACACACCGACTAACTACCTCATCTTGTCTCTGGCTGTGGCCGATCTGCTAATCGGAGGAGTTGTGATGCCTCCCAGCATGCTGCGCTCCATCCAGACCTGCTGGTATCTGGGTGATTTGTTCTGTAAGATACACAGCAGCGTTGATATTATGCTATGCATCGCATCTCTTTTGCACATATCCTTTATTTCTATCGATCGCTATTATGCTGTATGTCACCCTCTCCAATATCGAAGTAAAATCACACCGCCGGTTTCCTTCACGATGATTTCTCTAAGCTGGGGTCTGGCGGCCTTTGTTGGATTTGCGATGGTATTTCTACAACTCAATATTATGGGATcggaagacttttattttgataatgtcGCTTGTAATGGAGCTTGCATTATATTTCAAACCCCTGCAGCAAGTATTACGTCTTCATTCCTTGCTTTCGGCCTTCCTGCAGTAATCGCTGTCAGCATATATCTAAAAATTCTACTTGTTGCACGAAGACAGTCCAAATCTATACAAAGTGTAAGCAAGAAAAACAGCTTATCTGTGAACAAAAGTGAGGGGAAGGCCACCAAAACGCTGGCTATCATCATGGGGGTGTTCTTTATCAGCATCTCACCTTTTTTCTTCTGCAATTTAGTGGATCCGTTCATCGATTACACAATATCACCGGCTGTTTTTGATGTGCTTTTGTGGATTGGGTATTTTAATTCTCTGTGCAACCCTTTTGTTTACGCATTCTTTTATAGGTGGTTTAGAAAAGCTCTAAGAATTATTCTTCTGGCCAAAATATTTGTTGTGAATTCTTCACAGCTTGACTTGATGGGTCGACATGAGTAG
>TCONS_00036178
AGTTGAAGTGAAGCAGCAGCTTGACTACACGAGGGCCAGCATATTCGAGGAGGATTCATCTTTACGGCTTGTCTAACAGCGTGAAATTGACTTGAACGAACATCAAAAGAAGAAACTGAAATAATGTGAGGAAGAATAAATGCTGATCAGTGGTTTGTAAATACCTGGTGACCTGCTGCTCTTTGCAGCTGTTCTGTGGCTGACTGCACACTGATTTCTGCGTTTGATACGTTGGCCTCTATACTGTCTGTAGATGGAGAAAAACAGAGGTAAAATGCCGGATCCATTGTCGTTCATGAGATTTGTTGCTGCTGGTGATGGCCACGGGCGCCTGCAGGACTTCATTCCAAGAACCGACGCAAGGCATAAGTGAACTAAGCATCTGCTTGGGGCGCCCATGGCCACCAGGGGGACTCCATGAGTACATgaaatgactttttttgttttgactgaGTGActaaagtaatataataataatcataattaataaaataacaag

Function

symbol description
taar10 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in olfactory epithelium. Orthologous to human TAAR1 (trace amine associated receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-49 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in olfactory epithelium. Orthologous to human TAAR1 (trace amine associated receptor 1).

Ensembl:

ensembl_id ENSDARG00000069214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036177 False 1367 mRNA 0.42 3 46164338 46249185
TCONS_00036977 False 1030 lncRNA 0.43 1 46164393 46165422
TCONS_00036178 True 499 processed_transcript 0.43 4 46183187 46249185

Neighbor

gene id symbol gene type direction distance location
XLOC_018393 NA coding downstream 5182 46157629 ~ 46159156 (-)
XLOC_018392 taar10c coding downstream 9185 46154142 ~ 46155153 (-)
XLOC_018391 taar10d coding downstream 17609 46145718 ~ 46146729 (-)
XLOC_018390 taar10b coding downstream 26228 46137100 ~ 46138110 (-)
XLOC_018389 taar1b coding downstream 35748 46127591 ~ 46128590 (-)
XLOC_018395 bmf2 coding upstream 102421 46351606 ~ 46362606 (-)
XLOC_018396 rmdn3 coding upstream 193097 46442282 ~ 46467280 (-)
XLOC_018397 eif2b2 coding upstream 273893 46523078 ~ 46534179 (-)
XLOC_018398 tmed10 coding upstream 287413 46536598 ~ 46541843 (-)
XLOC_018399 fosab coding upstream 303126 46552311 ~ 46554440 (-)
XLOC_017928 CU539064.1 misc downstream 36110637 10053405 ~ 10053701 (-)
XLOC_018379 NA non-coding downstream 121350 46042321 ~ 46042988 (-)
XLOC_018378 NA non-coding downstream 180678 45907147 ~ 45983660 (-)
XLOC_018376 NA non-coding downstream 272573 45820540 ~ 45891765 (-)
XLOC_018377 NA non-coding downstream 309404 45852814 ~ 45854934 (-)
XLOC_018405 CU571074.1 non-coding upstream 634175 46883360 ~ 46883487 (-)
XLOC_018406 NA non-coding upstream 700585 46949770 ~ 46953118 (-)
XLOC_018407 CU571074.2 non-coding upstream 707906 46957091 ~ 46959768 (-)
XLOC_018409 FO904915.1 non-coding upstream 828794 47077979 ~ 47078093 (-)
XLOC_018410 CR385078.5 non-coding upstream 855517 47104702 ~ 47106279 (-)

Expression


Co-expression Network