XLOC_001840


Basic Information

Item Value
gene id XLOC_001840
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4314963 ~ 4318863 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005813
CTGTCGTTGGAATTCACTCTGGACGACGCTGATGACTGGAATCTGCAGCGTTGAGGCAATAAATTCCAACTTCACCAGTTCGTCCCTGTTTTGAGGAAACGAAATGATGGCAGAAACTCCTTGAACAATGACAGTGTGGCAAACACTTTGCAGGAACGACACAGGATCCGCACAGGCAGGTGTAGATGAAGAGGAAAAGGAGAAAGCAGGTAATTCTCCAAGCCCTGCTTCCACAGCCATGACAATCTCGAGCGTGAGGTTGTAAGGTAAAAGCCCCGCCACTCGATTGAGGCTCTCTGAAGCGAGTAATACAGAGTCTCGTGGCAGAAACACAACATCCGGAGCCACTTGTTTGAGTACGGTTTTACTTTTGGAGGCCTTGTTGAGGTTATTCACTGAGCTTTTAGTCCTGATACCCCTCCAGTCTTCTTCGTGGTCACTTTGAAATATCACATCCCACTCTTCCCACATTTCTCTGTCCGCATCCCAGTCCAGATCTCTCCCACTGAAGGAATCCTGCCTGAATACTCGAGGCTGAAGATGCAGAGCTCCGACTCTCACCGTATGTCCGATTCTCTTCAGAATCTGACATGGTTGTGGATGCGCCAGAGACGCCGGAGGAACGAGGATCATTATCAAAGCGCTTGGCGCAAGAAATGAAAGCCACATCAACCTTCCCAGCGCACCCCAGATCCAAGAGCCCGGCATTACTCCAAACAAGGCTCGGTTAATCTCTGGAAACGACGGGATCCACGTCCACCTGCGCGCCCGGTGGCTCCTGCACAGCGCTGGATAGATGATGGATCACCGGTGAATCTCCTAGACGCAGCAAAGTTGCGCTCCTCTCCAACAGGCTTCTGAGGGATCGCCAGCAGTGCAAGTGTCCAGCGCGGATCAAAACACTCGTTTCTCATCTCAAACGCGTTTACTGACAACACCTTCGAAGGAAACAATTAGAAGCGAGTTTTACGCGCTCTCCAAACAGaaaGTTAATGCACAGATTATAACGTCGGACCAGTGAGCAAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005813 True 1027 lncRNA 0.51 2 4314963 4318863

Neighbor

gene id symbol gene type direction distance location
XLOC_001839 NA coding upstream 15113 4289705 ~ 4299850 (+)
XLOC_001838 plppr1 coding upstream 55689 4235998 ~ 4259274 (+)
XLOC_001837 mn1a coding upstream 202127 4095917 ~ 4112836 (+)
XLOC_001836 pitpnb coding upstream 229747 4046448 ~ 4085216 (+)
XLOC_001835 TTC28 coding upstream 275177 3875716 ~ 4039786 (+)
XLOC_001841 NA coding downstream 16329 4335192 ~ 4341646 (+)
XLOC_001842 dre-mir-430a-1 coding downstream 174414 4493277 ~ 4493358 (+)
XLOC_001843 plk2a coding downstream 181080 4499943 ~ 4508530 (+)
XLOC_001844 palm2akap2 coding downstream 487460 4806323 ~ 4831218 (+)
XLOC_001845 NA coding downstream 491020 4809883 ~ 4810251 (+)
XLOC_001834 NA non-coding upstream 457078 3857067 ~ 3857885 (+)
XLOC_001830 CU570980.1 non-coding upstream 906063 3408783 ~ 3408900 (+)
XLOC_001827 NA non-coding upstream 1045145 3262578 ~ 3269818 (+)
XLOC_001823 NA non-coding upstream 1335459 2977535 ~ 2979504 (+)
XLOC_001848 NA non-coding downstream 642952 4961815 ~ 4963300 (+)
XLOC_001850 CU074419.1 non-coding downstream 667187 4986050 ~ 4987483 (+)

Expression


Co-expression Network