XLOC_001846 (palm2akap2)


Basic Information

Item Value
gene id XLOC_001846
gene name palm2akap2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4874542 ~ 4911001 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003662
GAGTGACTGAAATCTTTACAATTCaattaaaaacactataaaatgaTAAACCTACAGAGTGTATTATGAAGATAAACAAACATCCTAAtgatttggaatgacatgaggatgaCTAAAcgatgaactaatcctttaagaaTTGAAGCTGTTGAAACTGCATATTTTCCTTGTGCTGTGGTGAACGTTAGCTTCAGCTtcttagatgtgtgtgtgtgtaaactcatCTAGTATGAGTAAGAGAATTCAGCCAGTGTACTCGGAATCAGATCCACACCCAGCCGCACTGCGCTTTTCCTTGTAAGGTGTCTGCCGGCCGGTGGAGGAGTTTTAGAGACTCCCTCTGTCCAGGACTTGGACACAGCACTGATTGTAAGAGTACAGGACACAGGACACACCCCCTCTTTTAAAACCACACCCCCTTTATTCATGACATCATAGCCAATAGTTAGACAGAGCAAGAATTTTGACTCTGGTGGGACagacaagagagagagaggggggcaTTGTTGGAGAACGGACGGAAACTGAGGCCGGTGCCGTGGGgtgagtgaacacacacacacacacacacacacacgaggaaGAAGGGCGGGGGTTGGAAGACGTGGTCAGGAAAAGCCCTGCGTTGTGTTGTCCTGGGCATGGTTTCACTGGGTCTCCTCAAAGGTTTATAGTTTGAGGTGTTGGAAGAGGACTGTTCTCACATTACACATTTGACAACGGGACACTCAGGACTTCTAGCATGCGGTGATTTGTTTCTTTCACATGAAGGATTTCTAGTTTTGTGGACAGAAGTCTGTTAACTAGTTTGGAAAATTATGAAAAAGAAGTCCCCTGTACACTCAGAGGATGACAGTGAGCTGAAAAGAGACAGAAGCCTGAAGACAGTAAGTTTTTTCGATTCTGTGAGTGTCATATCCGGAGGTCAGAGCAATATGGAGCTTGGAGTTCAGACTGAGACCCAGCAAAGTTACATGAGCAGTGGACAGAATAAAGTGAAGCATGGGGGAGAAGGACTGGACAGCGAAGTTGCCCAGGAAATCCTTTACCTGGATGAGGTCCTTGAGGCCAACTGTTGTGATCCCAGAGCCGAAATGACTTCAAATGGGACAAGTTCCCCTGACACAGAGTCAATTAGAGTTCATGGAACTGGACCATCTGTGCACACTTGTGACACAACGGCCTTAAACCATCATGAAGTTGTTTTAGAAGGGAAAAAGCAGACAACTTTTGTTGATGATAATTACAACACCAAACCTAATGGTCATGCGGCGATGATAGGAAATAATGGCACAAGGTCACCTGAGTCGCCTAGGACGGCAATGAAGAAAGAGGCACGTTTTGAGCTGCGACCATTTCACGAAGAGAAAAAGCCATCGAAACTGTTTGACACCCCAACTGAGAAAGAAATTCGGGTGAAGAAAGTGAGACCCTCAGAAGAGGTCGCAGAGCTAGAGAGGGAAAGGCTGGAACTCATCCGGGGACAGGCAGTCAAGAAAAACCCTGGCATTGCAGCAAAATGGTGGAACCCACCTCAGGAAAAGACACTGGAAGAGGAGCTGGAACCAGAGCAGCTGGAGTCGCTTCGAAAGTATGAGGAGAGGAAGCAAAGGAAACCAGAAACCAACCGTATGCCGCAAGCTGCACCCAGACAGACTACCACCTTCATCCAACCTGAAATAGCAAATAAGGAGGACGTTGTCATGGAAGAGATTGACTTTTCTGCAGCTCGCAAGCAATTTCTGCAGATGGAACAAAGCAAGCATCCCACGGTCCCTAAGAGGAATGTGGCACCACAGCTTTACTCAGCCAAACCTTTCTTCAGGACTCCAGAGGTCACGCATGTAGAGAGGTCGTGCGGTTCTGTCACTGTTGCCAATCAGGAAGGGGTCACATCCTACGATGGAAGTGAAGTTACAACAGTCAAAGCTGAAAAGATTTACTGCTGCTCTGGAGAATCCTTCATACCCACGAAAGATGGATTATCTCAGAACGAGATGAAGGATGATGACTTTACTTGTGCCCGGGCAGTGATGACCATAGTGAAGGATGAGGATGTCGATTTGTGTCAACGTTCTTTCAACAGCTCCCACCACACAGAAGAAATCGACTCTGGGTTGGATGATCTATCACTACGGTCTCAGGACACCACTGTACTTGAGACGCTCTCCAATGACTTCAGTATGGATAACATAAGTGACAGCGGTGCATCAAATGAGACTATGAGTGCCTACTTGGAAAACTCTCTTGGGGAGTACTCTTTTCCCTCAACCCCGATGGCAACTACACCAATCAATGGAAAACACGAAATCAGTATCAAATCTCCAGGGGATCAGATTGGGACTTATCAGGGAGATGGTTTAACAGAAGAAGAGTTGGAATATCATGCTGGTATTCTTGTCCAAAACGCTATCCAGCAAGCCATTGCTCAGCAGAATGACAAATGGGAGCCACTTCAGGCTACACAACATTCGTCCCCCATCACAGAGAGACATGTGGAAAGTGTTCAACCACAACCCCTAGTGGAAAGACCCACTGTCACGCCACCTCCCAAAGTGCCATCCCCCCTACAGGAGAAAGAAACGGCTCCTCAAATAACTATAGCTCAAGCCACCCCAGTAATTCCAATGAACAATTACAAACCTCCCAGTCCGTCTCCTCCACCAAACGAGAAGCCAGAGTTCAGCTACTTCAGTAAGTACTCTGAGGCGGCAGAGCTCAGGAGCACCGCAACCGTCACTCGTGCTCAGGAAACAGAAGTGACCTCAGGGCCGTTCAAGCTGCGCTCACGCAAACAGAGGACCCTGTCCATGATCGAGGAGGAGATTCGAGCAGCACAGGAGCGCGAGGAGGAGTTGAAGAGACAACGGCAGGCGCAAACATTGCACCCACCGCGTGCACAAAAGCTGAAGGCCAGCACTCAGCCAAGCAAGCTGGTCCTCACTGGGAAGACAGCACCAGGTAAAATTGAGAAGGTTCGTCCAGCTCCTCCAGCCTCCCCTTGCTCTTCAGACGGAGCTCTGCCGTCGCCTCTGTCTGATCTGGGCAGTGATGATTCTGGAGGAGCTCAGAGACCCAAGAACTTCATGCAGACTTTGATGGAGGACTTCGAGACACACAAAGTCAAGCGCAGGGAGAAAGCCGAGGACAACAGTGTTCTGGAAGCAACGCGAGTGACTCGCAGAAAAAGTAACATGGCTGTCCGGTGGGAGGCCGGCATTTATGCCAACCAGGAAGACGccgaggaggaggaagaggaagaagaagagtaA
>TCONS_00003663
CGGGACACTCAGGACTTCTAGCATGCGGTGATTTGTTTCTTTCACATGAAGGATTTCTAGTTTTGTGGACAGAAGTCTGTTAACTAGTTTGGAAAATTATGAAAAAGAAGTCCCCTGTACACTCAGAGGATGACAGTGAGCTGAAAAGAGACAGAAGCCTGAAGACAGTAAGTTTTTTCGATTCTGTGAGTGTCATATCCGGAGGTCAGAGCAATATGGAGCTTGGAGTTCAGACTGAGACCCAGCAAAGTTACATGAGCAGTGGACAGAATAAAGTGAAGCATGGGGGAGAAGGACTGGACAGCGAAGTTGCCCAGGAAATCCTTTACCTGGATGAGGTCCTTGAGGCCAACTGTTGTGATCCCAGAGCCGAAATGACTTCAAATGGGACAAGTTCCCCTGACACAGAGTCAATTAGAGTTCATGGAACTGGACCATCTGTGCACACTTGTGACACAACGGCCTTAAACCATCATGAAGTTGTTTTAGAAGGGAAAAAGCAGACAACTTTTGTTGATGATAATTACAACACCAAACCTAATGGTCATGCGGCGATGATAGGAAATAATGGCACAAGGTCACCTGAGTCGCCTAGGACGGCAATGAAGAAAGAGGCACGTTTTGAGCTGCGACCATTTCACGAAGAGAAAAAGCCATCGAAACTGTTTGACACCCCAACTGAGAAAGAAATTCGGGTGAAGAAAGTGAGACCCTCAGAAGAGGTCGCAGAGCTAGAGAGGGAAAGGCTGGAACTCATCCGGGGACAGGCAGTCAAGAAAAACCCTGGCATTGCAGCAAAATGGTGGAACCCACCTCAGGAAAAGACACTGGAAGAGGAGCTGGAACCAGAGCAGCTGGAGTCGCTTCGAAAGTATGAGGAGAGGAAGCAAAGGAAACCAGAAACCAACCGTATGCCGCAAGCTGCACCCAGACAGACTACCACCTTCATCCAACCTGAAATAGCAAATAAGGAGGACGTTGTCATGGAAGAGATTGACTTTTCTGCAGCTCGCAAGCAATTTCTGCAGATGGAACAAAGCAAGCATCCCACGGTCCCTAAGAGGAATGTGGCACCACAGCTTTACTCAGCCAAACCTTTCTTCAGGACTCCAGAGGTCACGCATGTAGAGAGGTCGTGCGGTTCTGTCACTGTTGCCAATCAGGAAGGGGTCACATCCTACGATGGAAGTGAAGTTACAACAGTCAAAGCTGAAAAGATTTACTGCTGCTCTGGAGAATCCTTCATACCCACGAAAGATGGATTATCTCAGAACGAGATGAAGGATGATGACTTTACTTGTGCCCGGGCAGTGATGACCATAGTGAAGGATGAGGATGTCGATTTGTGTCAACGTTCTTTCAACAGCTCCCACCACACAGAAGAAATCGACTCTGGGTTGGATGATCTATCACTACGGTCTCAGGACACCACTGTACTTGAGACGCTCTCCAATGACTTCAGTATGGATAACATAAGTGACAGCGGTGCATCAAATGAGACTATGAGTGCCTACTTGGAAAACTCTCTTGGGGAGTACTCTTTTCCCTCAACCCCGATGGCAACTACACCAATCAATGGAAAACACGAAATCAGTATCAAATCTCCAGGGGATCAGATTGGGACTTATCAGGGAGATGGTTTAACAGAAGAAGAGTTGGAATATCATGCTGGTATTCTTGTCCAAAACGCTATCCAGCAAGCCATTGCTCAGCAGAATGACAAATGGGAGCCACTTCAGGCTACACAACATTCGTCCCCCATCACAGAGAGACATGTGGAAAGTGTTCAACCACAACCCCTAGTGGAAAGACCCACTGTCACGCCACCTCCCAAAGTGCCATCCCCCCTACAGGAGAAAGAAACGGCTCCTCAAATAACTATAGCTCAAGCCACCCCAGTAATTCCAATGAACAATTACAAACCTCCCAGTCCGTCTCCTCCACCAAACGAGAAGCCAGAGTTCAGCTACTTCAGTAAGTACTCTGAGGCGGCAGAGCTCAGGAGCACCGCAACCGTCACTCGTGCTCAGGAAACAGAAGTGACCTCAGGGCCGTTCAAGCTGCGCTCACGCAAACAGAGGACCCTGTCCATGATCGAGGAGGAGATTCGAGCAGCACAGGAGCGCGAGGAGGAGTTGAAGAGACAACGGCAGGCGCAAACATTGCACCCACCGCGTGCACAAAAGCTGAAGGCCAGCACTCAGCCAAGCAAGCTGGTCCTCACTGGGAAGACAGCACCAGGTAAAATTGAGAAGGTTCGTCCAGCTCCTCCAGCCTCCCCTTGCTCTTCAGACGGAGCTCTGCCGTCGCCTCTGTCTGATCTGGGCAGTGATGATTCTGGAGGAGCTCAGAGACCCAAGAACTTCATGCAGACTTTGATGGAGGACTTCGAGACACACAAAGTCAAGCGCAGGGAGAAAGCCGAGGACAACAGTTTTGTCCACTCAGTTACCTCTGAGGTTCTGGAAGCAACGCGAGTGACTCGCAGAAAAAGTAACATGGCTGTCCGGTGGGAGGCCGGCATTTATGCCAACCAGGAAGACGccgaggaggaggaagaggaagaagaagagtaA

Function

symbol description
palm2akap2 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Orthologous to human PALM2AKAP2 (PALM2 and AKAP2 fusion).

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-62 Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Orthologous to human PALM2AKAP2 (PALM2 and AKAP2 fusion).

Ensembl:

ensembl_id ENSDARG00000069608

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003662 False 3272 mRNA 0.48 4 4874542 4911001
TCONS_00003663 True 2576 mRNA 0.49 5 4875262 4911001

Neighbor

gene id symbol gene type direction distance location
XLOC_001844 palm2akap2 coding upstream 43324 4806323 ~ 4831218 (+)
XLOC_001845 NA coding upstream 64291 4809883 ~ 4810251 (+)
XLOC_001843 plk2a coding upstream 366012 4499943 ~ 4508530 (+)
XLOC_001842 dre-mir-430a-1 coding upstream 381184 4493277 ~ 4493358 (+)
XLOC_001841 NA coding upstream 532896 4335192 ~ 4341646 (+)
XLOC_001847 slc46a2 coding downstream 13387 4924388 ~ 4934610 (+)
XLOC_001848 NA coding downstream 50814 4961815 ~ 4963300 (+)
XLOC_001849 lyrm7 coding downstream 53462 4964463 ~ 4969208 (+)
XLOC_001850 CU074419.1 coding downstream 75049 4986050 ~ 4987483 (+)
XLOC_001851 NA coding downstream 76765 4987766 ~ 4996049 (+)
XLOC_001840 NA non-coding upstream 555679 4314963 ~ 4318863 (+)
XLOC_001839 NA non-coding upstream 574692 4289705 ~ 4299850 (+)
XLOC_001857 NA non-coding downstream 321326 5232327 ~ 5234250 (+)
XLOC_001863 NA non-coding downstream 616189 5527190 ~ 5543141 (+)

Expression


Co-expression Network