XLOC_018474


Basic Information

Item Value
gene id XLOC_018474
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 51910775 ~ 51914273 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037004
atgcaatactaatatcttataaaaaaataactagtaaaactATAACTGGTAAATTATTATATACTGTGCACCGTGGTAGCTCAGTGGAGGATGAATAATTTTATGTGATAATTACATTATAAACGCAAGGGAAATTGATGTAATTACAGTATAAACTCTATAGGGAAAACATTTCCATTTTTGACTGCATGGTTGTCGTGTAAACGTAGCCTAAAATAAACCCGGCTTGTGTGTTTTCTGAAGAGGCTTCACTGtgcaatattgtgtgtgtgtgtgtgtgtgcgtgggtgcGAGCATGTACGAGAGTCAGACTTTCTGCTGTCCCACACACACATGCCATActtctgtgtttttgttgttttcagtTGCATTCAGGTGCTTATTTGTGGCTTGGATCTTCTTTTTGATGGTTAACAGTTTTGGTATTGTTTTACATTGAGGTTCCGTTTGTTTATGACGTCAGGGATGTtagcaaaaactgaaaaaaaaacaaacaaactataaaaCTCTTTTACTTCAAGTTGAATGGAAATGACTGCAGAACAATTAAAAGtttatatgcaaaaaataaagttaacatGAATTATATTTAGCATCAAATTTTCATAAAAattccataaaataaaaaaattatcaattaccatttcttttgttttgtggTGTTCAGTTGTAGTGCTTCTTTGCACCACTTAAAAAAACTTATAGAGACCCATCTAAAAACAATCGAcaatcaataattcatttagtaTAAATACAAGTTTGAGTAACAGAAACTTAAACCGAAACATACCTTTGTACATGATTCTCGGTAACCTTTAAAACAAGCTCATCGCACCAGTAACGACTCTCACTTATAACGTCCGCTTCGCGGGCATTTCACGTTGTGTGCGTCACCGTCGCATTTATACACATGCATTAAATGAATGATGTTTGTCTCCCCAATTCAAATAGTAAAGAGAATGATTAAACAATGTTATTAACCGTTTAACTGTAAACGTTTCTATACAGAACAAATAAACTTGatattttttttcgtttttttatttccGTTCCTTGAACCGGTTCGGAGCCCTGGGGTCTGTTtttcgtacctcacttaaatgatttaagatgatttggcagatcctggatctggcctctggctaatttggttcttcaaacaagttcgtaaatcagattaaaatgtctggataaactgatctgagattgatgtgtgtgttgtgaaggacagatctatcgatcctcgaaatcatgatcagcaatgcagcgattggctgatggcacagcagcgtaatgacatcatctgattaatattcaattatccatgtgagctaaattacataaaatccgtagtaaacggtttgttaaaatgatacgcaataactttacacctttgttgtgggctgcatgcttggcccTGTCATGTGTCAAGAgccttttatttagttttacagttagagcggattttccttattatagtagtattatttatatagCCGTTTTTTAttctgtgtaaagaataactggatgtttacaatatttgatattggtaaaggcgtctgcagcttttgtgaagcatcaaatccgtgtcatattaactgtcaaaacatgtttatgactgcataaatgtattattgcttttaaaaagtcacatattgtgcatgccTGTTATCATACACAGATTTTAcgaaagcgatctaaaaagttcatatcaataagttttcaatttgcaccagcaggtggcagtctttgtactttcatttcgttggtgcagattgcatacgttttattaatatatatatataactttatttatttattaataactataactttatatatatatatatatatatatagttatatatatatatagttttaaaaatatttattattttgcccagtgtttataactactactgtaagaaaatatcagcatttggtacatttattagtattatctttgcttgaactgacccaatctaatcctgtttacatgaattgaacctgctccagACCAGgattgagctagcagaactgttgctatgacaacaactctcagatcagttttgaaaaatgaaatgattctggatcgtgtcaaatcgtcactaatcaaatccagctaactgagtaatccacgtacgaagaacagacctcTGCTCATAACCCTGATTTTTAGTCGTTCAATAGATATTAATACAGATAAAGacaattttagttttagtttgaaaattttTGTTTGAAATTTGACAGAAATGGAGtaattattaattacttaaattaattaatgatacaaataatgttacaaaaaacattaaaatcgaATAttctaaagtaataataaaaataacatgctAAAAGTGAACAGCAGTACttaaaatcataaacaaatagACCTCATTATAAAGTCTTACCAAATTAGGTTTAAAAAACAGCTTTATAAGTGTCAGGATGACTGTTTGTATGAGTATTTATGTCTTTATTATCGCTGACAATCACACTTGGTTTAAATATAAACGACTGCATGATTATTACAGGCAACAGCTGAGGTATATCACTATTATATCACCATCAAATATAGCTCCGACATCTGCTTGCGGACTAAATAGCAGACTACTTTGGTTTGCAATGACACGAggatatatttgttttgtttataatgcCATTATTGCACATTGTGTGTGAGAATGATTGCAGTATCTGATGTAAATCTGCCTTTGCACTGTACAAAACGatgacttaaaaagtgagtaaatccgttgccttaaaagtgacaagttgattTAACTTGAACTTAAAATACAAGTAATTCTGTTGTAATTTCAGCTCAGTCTTTatttcacagcggaatgaaccgccaactattgcagcatatgttttacacagtggatgcccttccagctgcaacccagtactgggaaacacccataaactctcattccCACTCcccacagaggaaacccacgccaacacggggagaacatgcaaactccacacagaaactccaactgacccagctgggactcgaaccagctaccttcctgctgtgaggccacagtgctaaccactgagccaccatgccacccctcaATTTACTAAATTTTAAGGCAGTGGGTTTACCCGTCAGACTTTGTACAGTGTGTGTCGGACAGATTTCAGCGACTGTATGGAAGCGCTTCAGGAATGTGGAAAGATGTATGTTTTGCATATGAACCGTGCCTCAATCGGTGCCTTAACTCCTGTTGTTTCCTGACTTTTCTGAGTCACGGCTTTAAACCGAAGCTCTGTGTAGCGCGAGGGTTTCTGGCTGTTTTCAAAACGCTAGAAAAGTCCATTTCTGTTGTATTTGTACAGAAAAGCTGTGAAACAATTCAACTCTGGTCTCGTGCAGAGTGTGAAGTGAACAGTTTATTACTCCTCACCCGTCAACATGAAGGGTTTTTCTATGaaaatgcagttttatttttcagCTTTACACAAACCTCCTGCACTTTGGcca

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0051261 protein depolymerization biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060047 heart contraction biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0031430 M band cellular_component
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:1901681 sulfur compound binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037004 True 3499 lncRNA 0.35 1 51910775 51914273

Neighbor

gene id symbol gene type direction distance location
XLOC_018473 mia3 coding downstream 78959 51758426 ~ 51831816 (-)
XLOC_018472 BX936461.1 coding downstream 161607 51748497 ~ 51749168 (-)
XLOC_018471 brox coding downstream 182915 51700633 ~ 51727860 (-)
XLOC_018470 si:ch211-14a11.2 coding downstream 213338 51695479 ~ 51697437 (-)
XLOC_018469 si:ch211-14a11.1 coding downstream 228680 51680006 ~ 51682095 (-)
XLOC_018475 dusp10 coding upstream 3233 51917506 ~ 51946052 (-)
XLOC_018476 CU905509.1 coding upstream 229918 52144191 ~ 52144305 (-)
XLOC_018477 hlx1 coding upstream 281252 52195525 ~ 52199311 (-)
XLOC_018478 rhpn1 coding upstream 319708 52233981 ~ 52271262 (-)
XLOC_018479 naprt coding upstream 359173 52273446 ~ 52314299 (-)
XLOC_017928 CU539064.1 misc downstream 41857074 10053405 ~ 10053701 (-)
XLOC_018467 NA non-coding downstream 268427 51619897 ~ 51642348 (-)
XLOC_018462 CU660013.2 non-coding downstream 568042 51342164 ~ 51342733 (-)
XLOC_018461 CU660013.3 non-coding downstream 569258 51341381 ~ 51341517 (-)
XLOC_018456 AL928824.3 non-coding downstream 754604 51062867 ~ 51156171 (-)
XLOC_018481 NA non-coding upstream 627193 52541466 ~ 52544754 (-)
XLOC_018486 NA non-coding upstream 739227 52653500 ~ 52654969 (-)
XLOC_018488 NA non-coding upstream 758835 52673108 ~ 52676467 (-)
XLOC_018489 BX005301.1 non-coding upstream 771956 52686229 ~ 52691004 (-)

Expression


Co-expression Network