XLOC_018478 (rhpn1)


Basic Information

Item Value
gene id XLOC_018478
gene name rhpn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52233981 ~ 52271262 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036292
CGCGGACAGGCAACAAGTGGATTTCGGGATTGCGAGcacatttttaatactttaaagttcgcattttgcttgcaaaatggCGTATTTACACTCCTATATAGCTAAAGATAACCGTTGAGCGCTTTAAACAAGAATAAACAAACCGTTAAAGTGGCGTTCGTGTTCTGGTAGCATCGTTAACGGATTTACCGTTAAGTTTACGCAGTTTCTTACAGGTGTATACAGCATTATTACAGGTGGACTCATCATGTCCGATTCTGGTTCAGATGAGGATTTAACGCCGGAGGACAGAGGCTCCACAGAGTCCGTCCGAAAGggatGTGATCCTCTGGTGTCGACCCAGCGCAGTAAGCTGCAGCAGCGCAGAGCCAAACTCAACCAGCAGATCAACCGAGAGCTGCTTCTGCGCAGCGGAGCTGAAAATCTCTACagGGCCAGCACTAATCAGAAGGTGAAGGAGACCGTTGCATTGGAGCTGAGTTTTGTCAACTCCAACCTTCAGCTTCTCAAAGAAGAACTGGAGGAATTGAACAGCAGTATGAACATCTACCAGACTGAGAGTGAGACTCTCAATGTTCCCATGATTCCCCTGGGCTTGAAAGAGACAAAAGAGATTGACATGACCGTTCCTCTTCAGGATTTTATTGCTGAACATTACGGCGAGGACGCATCTCTGTACCTGAACGAGATCCAGGATTTCATGGAGCTTAGACAGGCCATGCGGACTCCCAGCAGGAATGAAGCAGGACAGGAGCTGCTGATGGAATATTTCAACCAGCTGTATTTCCTGGACCAGCGCTTCTTCTCTCCACACAGAAGTCTGGGCGTTCATTTCCACTGGTATGATTCTCTAACCGGTGTGCCTTCAGTGCAGAGAGCGCTGGCCTTCGAGAAAGGAAGCGTTTTGTTCAACATCGGAGCTCTTTATACTCAGATCGGAGCCAGGCAGGATCGCTCCACACTGAGTGGCATTGAGGATGCCATCGATGCTTTCCAGAGAGCAGCCGgtgcatTTCTCTACCTGCAGGAGAATTTCTCTCATGCGCCCAGTCTGGATATGAGCGGCTCTGCGCTGAGCATGTTGGTCCGGCTCATGGTAGCTCAGgttcaggagtgtgtgtgtgagaaggtCCTACTTAACATACAGGACATCCACCTGAATGTGCTTCTGCAAGCTGCCCAGGAGGCTGCTAGGgTATCAGACGTGTATTCTCTAGTTCTTCAGGCGATGTCTGTGCCGCTACTGAAGGATTACGTTCCCTTCTCCTGGATCTCTATGGTTCAGGTCAAAACTCATCATTTCAGAGCGCTGGCGCATTATTACACTGCTGTGGCTCTGTGTGACTGCTCAGGTGTTggggatgaagatgaagatggtGCAGAAATTAAAGCTCTTGTTCAGATTCACACCAGACAGCCAGAAAAACTCAATCTCCAGGATCCCGAGGACAAGCGGAGACTCGGTAAAGCTCACCTGCGTAAAGCCATCATTCGTCACGAGGAGGCTCTGCGTCTTCACGGCGTGTGTAAAATGCTCCGAAAGATGGACATCCTGCAGGAGGTGTTGTCTGACGCTCACACGCGCTCGCTGGAGAAATACTCGGACATCGATCAAGAAGACGATTTCTGTGAGGTCGCAGAGGCTCCGGAGGTCCAGTCTCACACACAGCAGAAGCCTGATATCAAAGCTCCAGATTTCAGTGTGGTCAGAGTGACTGATATTTTCCACAGACTGggtcCGCTCTCTGTGTTTTCTGCACGCAACCGCTGGACGAGGCGTCACGTGTGTTTGGTTCGAGGAGAGGCGGGGCTTGGGCTCACACTGCGAGGTGATTCGCCGGTTCTGGTTGCCGGAGTATTGCCAGGTGGATGTGCTGCGgGAGGGCTACGTGAGGGGGATTATATAGTGGCTGTGAACTCTGTGGACTGCAGATGGGCTGAACATGCAGAGGTGGTTCATGCGCTGAAGAGCTGTCCAGACAGAGGACTAGAGCTGGACATCATCACACTGCAGACACATGAGGTGGAGAGGAGGATGAATCTGTCCCCCAGCGGAGAGCAGGATTATCAGTCGGGCAGTCAGAGGAGAGCAGGCCGTGAATACGGAGGATCTTCATCATCTGTGTGGGGCTGGAGTTGGAGAAACAGCGGCGTCAGTAAGAGACTCGGCAGCACCTTCAGTCTGTCCTTCAGCAACTCCAGAGAGAGTCAATCCATGCACTGAACACTACAGGGAAAGACAA
>TCONS_00036293
ATGTCCGATTCTGGTTCAGATGAGGATTTAACGCCGGAGGACAGAGGCTCCACAGAGTCCGTCCGAAAGggatGTGATCCTCTGGTGTCGACCCAGCGCAGTAAGCTGCAGCAGCGCAGAGCCAAACTCAACCAGCAGATCAACCGAGAGCTGCTTCTGCGCAGCGGAGCTGAAAATCTCTACagGGCCAGCACTAATCAGAAGGTGAAGGAGACCGTTGCATTGGAGCTGAGTTTTGTCAACTCCAACCTTCAGCTTCTCAAAGAAGAACTGGAGGAATTGAACAGCAGTATGAACATCTACCAGACTGAGAGTGAGACTCTCAATGTTCCCATGATTCCCCTGGGCTTGAAAGAGACAAAAGAGATTGACATGACCGTTCCTCTTCAGGATTTTATTGCTGAACATTACGGCGAGGACGCATCTCTGTACCTGAACGAGATCCAGGATTTCATGGAGCTTAGACAGGCCATGCGGACTCCCAGCAGGAATGAAGCAGGACAGGAGCTGCTGATGGAATATTTCAACCAGCTGTATTTCCTGGACCAGCGCTTCTTCTCTCCACACAGAAGTCTGGGCGTTCATTTCCACTGGTATGATTCTCTAACCGGTGTGCCTTCAGTGCAGAGAGCGCTGGCCTTCGAGAAAGGAAGCGTTTTGTTCAACATCGGAGCTCTTTATACTCAGATCGGAGCCAGGCAGGATCGCTCCACACTGAGTGGCATTGAGGATGCCATCGATGCTTTCCAGAGAGCAGCCGgtgcatTTCTCTACCTGCAGGAGAATTTCTCTCATGCGCCCAGTCTGGATATGAGCGGCTCTGCGCTGAGCATGTTGGTCCGGCTCATGGTAGCTCAGgttcaggagtgtgtgtgtgagaaggtCCTACTTAACATACAGGACATCCACCTGAATGTGCTTCTGCAAGCTGCCCAGGAGGCTGCTAGGgTATCAGACGTGTATTCTCTAGTTCTTCAGGCGATGTCTGTGCCGCTACTGAAGGATTACGTTCCCTTCTCCTGGATCTCTATGGTTCAGGTCAAAACTCATCATTTCAGAGCGCTGGCGCATTATTACACTGCTGTGGCTCTGTGTGACTGCTCAGGTAACTatggtGCAGAAATTAAAGCTCTTGTTCAGATTCACACCAGACAGCCAGAAAAACTCAATCTCCAGGATCCCGAGGACAAGCGGAGACTCGGTAAAGCTCACCTGCGTAAAGCCATCATTCGTCACGAGGAGGCTCTGCGTCTTCACGGCGTGTGTAAAATGCTCCGAAAGATGGACATCCTGCAGGAGGTGTTGTCTGACGCTCACACGCGCTCGCTGGAGAAATACTCGGACATCGATCAAGAAGACGATTTCTGTGAGGTCGCAGAGGCTCCGGAGGTCCAGTCTCACACACAGCAGAAGCCTGATATCAAAGCTCCAGATTTCAGTGTGGTCAGAGTGACTGATATTTTCCACAGACTGggtcCGCTCTCTGTGTTTTCTGCACGCAACCGCTGGACGAGGCGTCACGTGTGTTTGGTTCGAGGAGAGGCGGGGCTTGGGCTCACACTGCGAGGTGATTCGCCGGTTCTGGTTGCCGGAGTATTGCCAGGTGGATGTGCTGCGgaggGAGGGCTACGTGAGGGGGATTATATAGTGGCTGTGAACTCTGTGGACTGCAGATGGGCTGAACATGCAGAGGTGGTTCATGCGCTGAAGAGCTGTCCAGACAGAGGACTAGAGCTGGACATCATCACACTGCAGACACATGAGGTACACACAcacctGATGAATCTGTCCCCCAGCGGAGAGCAGGATTATCAGTCGGGCAGTCAGAGGAGAGCAGGCCGTGAATACGGAGGATCTTCATCATCTGTGTGGGGCTGGAGTTGGAGAAACAGCGGCGTCAGTAAGAGACTCGGCAGCACCTTCAGTCTGTCCTTCAGCAACTCCAGAGAGAGTCAATCCATGCACTGA

Function

symbol description
rhpn1 Predicted to act upstream of or within signal transduction. Orthologous to human RHPN1 (rhophilin Rho GTPase binding protein 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-79 Predicted to act upstream of or within signal transduction. Orthologous to human RHPN1 (rhophilin Rho GTPase binding protein 1).

Ensembl:

ensembl_id ENSDARG00000052454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036292 False 2243 mRNA 0.51 16 52233981 52271262
TCONS_00036293 True 1968 mRNA 0.52 16 52234000 52271015

Neighbor

gene id symbol gene type direction distance location
XLOC_018477 hlx1 coding downstream 34670 52195525 ~ 52199311 (-)
XLOC_018476 CU905509.1 coding downstream 89676 52144191 ~ 52144305 (-)
XLOC_018475 dusp10 coding downstream 287929 51917506 ~ 51946052 (-)
XLOC_018474 NA coding downstream 319708 51910775 ~ 51914273 (-)
XLOC_018473 mia3 coding downstream 402165 51758426 ~ 51831816 (-)
XLOC_018479 naprt coding upstream 2184 52273446 ~ 52314299 (-)
XLOC_018480 si:ch1073-287p18.1 coding upstream 61710 52332972 ~ 52338810 (-)
XLOC_018481 NA coding upstream 270204 52541466 ~ 52544754 (-)
XLOC_018482 si:dkey-235d18.6 coding upstream 328697 52599959 ~ 52603094 (-)
XLOC_018483 si:ch211-221n20.7 coding upstream 341759 52613021 ~ 52616333 (-)
XLOC_017928 CU539064.1 misc downstream 42180280 10053405 ~ 10053701 (-)
XLOC_018472 BX936461.1 non-coding downstream 484813 51748497 ~ 51749168 (-)
XLOC_018467 NA non-coding downstream 591633 51619897 ~ 51642348 (-)
XLOC_018462 CU660013.2 non-coding downstream 891248 51342164 ~ 51342733 (-)
XLOC_018486 NA non-coding upstream 382238 52653500 ~ 52654969 (-)
XLOC_018488 NA non-coding upstream 401846 52673108 ~ 52676467 (-)
XLOC_018489 BX005301.1 non-coding upstream 414967 52686229 ~ 52691004 (-)
XLOC_018491 NA non-coding upstream 547545 52818807 ~ 52819616 (-)

Expression


Co-expression Network