XLOC_018480 (si:ch1073-287p18.1)


Basic Information

Item Value
gene id XLOC_018480
gene name si:ch1073-287p18.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52332972 ~ 52338810 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036295
TCCGGCGGACAGAACAAACCGCtacataatataaacaaaacagatttacgcGGAATCTTGCAcagtaatgttttttaataacagTGAACGGGTTTTGCTGTAACTAAAGCAGCAATGAGGTTTGTTAAACGGATATTTAGTCGTCAGTGTGGGTTGTTTTGCAGGAATGTGTCCTCATACACACAAGGACAGAGTCCAGAAGCGAGAATTAGAGAGTATTTCTACTATATCGATCATCAAGGACAGCTCTTTCTGGATGACACCAAGGTGAAGAACTTTGTCACCTGTTTCAAAGGTATTTCTATATCTGCACTGtatacattgagACCAGCACTTCTTAGTTTTCTTCTTCAGCCGTCTGAAAGTGAACCAGAGCGGCCGCTATCAGCAGGACTTCCCGTTTGTCTCGCTCTGCGGACGCGAGCGCAACTTCCTGCGTTGCGAGGATCAGCCCATAGTTTTCACTCACCTGTTCTCAGAGGTGGGGCTTGAGGACCGTCTCTCATACTGTGGGGGCGGAGCTAAGCTGAGCGTTCCATTCCGCCCACAATCCCTCTTCATGCATCCAGACAGCGGTAGAGTTTACCATCCCGGGCCGGAGCGGACTGGAGGAGCGGGTCTGCTAAGATCAGCTCTGGCCATTGAGATCAGCGCACATTTTGGGTACGACACAGGACAGGATGGCACAGCAGCACAGCCCACTCACTTCACATGGGCAGGCCGACGACACGCTCTCAGCAAAGAGTTGGAGAAACATTTCCCTGTGCAGAAAGATGAATGCATGAAGATACGGTGATTCAACATGCAAATACACTGTTGAAGTAACACCATAAACCAATTTAAAGTtgaattcaa
>TCONS_00036296
atataaacaaaacagatttacgcGGAATCTTGCAcagtaatgttttttaataacagTGAACGGGTTTTGCTGTAACTAAAGCAGCAATGAGGTTTGTTAAACGGATATTTAGTCGTCAGTGTGGGTTGTTTTGCAGGAATGTGTCCTCATACACACAAGGACAGAGTCCAGAAGCGAGAATTAGAGAGTATTTCTACTATATCGATCATCAAGGACAGCTCTTTCTGGATGACACCAAGGTGAAGAACTTTGTCACCTGTTTCAAAGACCAGCACTTCTTAGTTTTCTTCTTCAGCCGTCTGAAAGTGAACCAGAGCGGCCGCTATCAGCAGGACTTCCCGTTTGTCTCGCTCTGCGGACGCGAGCGCAACTTCCTGCGTTGCGAGGATCAGCCCATAGTTTTCACTCACCTGTTCTCAGAGGTGGGGCTTGAGGACCGTCTCTCATACTGTGGGGGCGGAGCTAAGCTGAGCGTTCCATTCCGCCCACAATCCCTCTTCATGCATCCAGACAGCGGTAGAGTTTACCATCCCGGGCCGGAGCGGACTGGAGGAGCGGGTCTGCTAAGATCAGCTCTGGCCATTGAGATCAGCGCACATTTTGGGTACGACACAGGACAGGATGGCACAGCAGCACAGCCCACTCACTTCACATGGGCAGGCCGACGACACGCTCTCAGCAAAGAGTTGGAGAAACATTTCCCTGTGCAGAAAGATGAATGCATGAAGATACGGTGATTCAACATGCAAATACACTGTTGAAGTAACACCATAAACCAATTTAAAGTtg

Function

symbol description
si:ch1073-287p18.1 Orthologous to human C8orf82 (chromosome 8 open reading frame 82).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-80 Orthologous to human C8orf82 (chromosome 8 open reading frame 82).

Ensembl:

ensembl_id ENSDARG00000075765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036295 False 855 mRNA 0.48 3 52332972 52338810
TCONS_00036296 True 789 mRNA 0.48 3 52332979 52338782

Neighbor

gene id symbol gene type direction distance location
XLOC_018479 naprt coding downstream 18673 52273446 ~ 52314299 (-)
XLOC_018478 rhpn1 coding downstream 61710 52233981 ~ 52271262 (-)
XLOC_018477 hlx1 coding downstream 133661 52195525 ~ 52199311 (-)
XLOC_018476 CU905509.1 coding downstream 188667 52144191 ~ 52144305 (-)
XLOC_018475 dusp10 coding downstream 386920 51917506 ~ 51946052 (-)
XLOC_018481 NA coding upstream 202656 52541466 ~ 52544754 (-)
XLOC_018482 si:dkey-235d18.6 coding upstream 261149 52599959 ~ 52603094 (-)
XLOC_018483 si:ch211-221n20.7 coding upstream 274211 52613021 ~ 52616333 (-)
XLOC_018484 si:ch211-221n20.1 coding upstream 290065 52628875 ~ 52631998 (-)
XLOC_018485 si:ch211-221n20.2 coding upstream 300567 52639377 ~ 52642504 (-)
XLOC_017928 CU539064.1 misc downstream 42279271 10053405 ~ 10053701 (-)
XLOC_018474 NA non-coding downstream 418699 51910775 ~ 51914273 (-)
XLOC_018472 BX936461.1 non-coding downstream 583804 51748497 ~ 51749168 (-)
XLOC_018467 NA non-coding downstream 690624 51619897 ~ 51642348 (-)
XLOC_018462 CU660013.2 non-coding downstream 990239 51342164 ~ 51342733 (-)
XLOC_018486 NA non-coding upstream 314690 52653500 ~ 52654969 (-)
XLOC_018488 NA non-coding upstream 334298 52673108 ~ 52676467 (-)
XLOC_018489 BX005301.1 non-coding upstream 347419 52686229 ~ 52691004 (-)
XLOC_018491 NA non-coding upstream 479997 52818807 ~ 52819616 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_07850412_07853905 NA coding CI01000029 null 7850180 ~ 7854017 (-)