XLOC_018488


Basic Information

Item Value
gene id XLOC_018488
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52673108 ~ 52676467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036517
accGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTCTCTGGTAAAGATTATCATTACAGgaGCTAAAGTCTACAGCCAGTTTGAATGCAGCAACTGAATAAACAGTGGGGTCATTTTTGtggttgaattgcattaataaaaataaaagtgtggataattatataaa
>TCONS_00036518
GGATTGGATCATGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTCTCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAAACCATTCAATAGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtcatagagaagtggagagcatgagactgattaatgaaagaccccagtgacagatgagtgCCCACATTGACCCTGTGGTCCAG
>TCONS_00036519
GGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTCTCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAAACCATTCAATAGtccctttatttatcaggggttgccacagcagaatgaaccgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGGTGAGTGGGATTGACAAACCACTTGGAGGGAACACTCTTGCTGTCTTAATGCAATagacattttgttataaataatcatgtgtgtttcatgtttattcatataactgctattttatctcttagcacttcatttttgtcttgatatttaatatctcttgtttaaatacactatgaacagcagctgcgCTAATTATTTTCCTTGTTCCCTATTTCCTCCTGGGGATATTCATCCAGAGGCCTCTAGAGGTCgtaacctgtgaagagatgatgccaccatagaggacttctaaaTGTATCCATAATCCTGAAACAGACCGTAtcatgagcagatgctgtggtggtc
>TCONS_00036520
GGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTCTCTGGTAAAGATTATCATTACAGTGAAGTAAAAGAATTTAACAGACAGATTTACAAACAACTGACGAAAGAAGGGAAACCATTCAATAGcggatgcccttccagctgcaacccagtactgggaaacacccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaatgaccactggcccagccggggcttgaaccagcaaccttcttgctgtgaggcgacggtgctaaccactgtgctgccctatgtGCTCTATGCGGGTGAGTGGGATTGACAAACCACTTGGAGGGAACACTCTTGCTGTCTTAATGCAATagacattttgttataaataatcatgtgtgtttcatgtttattcatataactgctattttatctcttagcacttcatttttgtcttgatatttaatatctcttgtttaaatacactatgaacagcagctgcgCTAATTATTTTCCTTGTTCCCTATTTCCTCCTGGGGATATTCATCCA

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036517 False 290 lncRNA 0.42 3 52673108 52676467
TCONS_00036518 False 603 lncRNA 0.47 5 52674005 52676422
TCONS_00036519 False 790 lncRNA 0.44 4 52674085 52676410
TCONS_00036520 True 611 lncRNA 0.43 4 52674195 52676410

Neighbor

gene id symbol gene type direction distance location
XLOC_018487 si:ch211-221n20.4 coding downstream 6958 52663031 ~ 52666150 (-)
XLOC_018486 NA coding downstream 18139 52653500 ~ 52654969 (-)
XLOC_018485 si:ch211-221n20.2 coding downstream 30604 52639377 ~ 52642504 (-)
XLOC_018484 si:ch211-221n20.1 coding downstream 41110 52628875 ~ 52631998 (-)
XLOC_018483 si:ch211-221n20.7 coding downstream 56775 52613021 ~ 52616333 (-)
XLOC_018489 BX005301.1 coding upstream 9762 52686229 ~ 52691004 (-)
XLOC_018490 si:ch211-221n20.7 coding upstream 25545 52702012 ~ 52705325 (-)
XLOC_018491 NA coding upstream 142340 52818807 ~ 52819616 (-)
XLOC_018492 tbc1d7 coding upstream 148748 52825215 ~ 52846212 (-)
XLOC_018493 CABZ01076171.1 coding upstream 150543 52827010 ~ 52827126 (-)
XLOC_017928 CU539064.1 misc downstream 42619407 10053405 ~ 10053701 (-)
XLOC_018481 NA non-coding downstream 128354 52541466 ~ 52544754 (-)
XLOC_018476 CU905509.1 non-coding downstream 528803 52144191 ~ 52144305 (-)
XLOC_018474 NA non-coding downstream 758835 51910775 ~ 51914273 (-)
XLOC_018472 BX936461.1 non-coding downstream 923940 51748497 ~ 51749168 (-)
XLOC_018498 NA non-coding upstream 297393 52973860 ~ 52995339 (-)
XLOC_018501 NA non-coding upstream 611406 53287873 ~ 53292515 (-)

Expression


Co-expression Network