XLOC_001849 (lyrm7)


Basic Information

Item Value
gene id XLOC_001849
gene name lyrm7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4964463 ~ 4969208 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003666
TCCAGCAGGTGTCGCCGCACAGCCTCACAGTAGCAAACACCTTCTGAAGAACAAGACTTCTGCATGATGGGGACACGCTTGAAGGTGCTCCGGGTGTTCAAAGATCTGCACAGGACCAGAAGAGATGTTTTTAGAGATGATAACAGAGCTCTGACAGCTGCCAGggttaaaataaatgaagaatttaaaagaaacaagaatGAAACGTCAGATGATAATATTAAAGAGATGCTTAAAATGGCACGAGCGGTTGAGACCATTCTTCGTGAAAGTGTAATCCAGGCAGAGCATGTGGATGAAAATAAAATCGTGTTGCGGCCGCGGAAGAGTCTCCTGCTAGAAAACGTACCTTACTGTGATGCACCCAGTAAAAAGACATGACCCGGATTTACCTGCATGACCCAGGTCTATCTGTGATATTGGACGATGAAACGCAGTCATAAAGATGACTCAGTATTCTTCCATATTTCATTTCCACTGGAATATCACACACAAGCTACAAAAAACGTGTATATTTGGTGAGGCTGATGTTATTGTGCTCAATATAAAGCATTGAATTGCCACTTTGTAAATAGCATTTGTATGGATAAAAGTGTTGAATAAACTGGAAAAGAAAAGGGATTATTCAGACA
>TCONS_00003667
AGAACAAGACTTCTGCATGATGGGGACACGCTTGAAGGTGCTCCGGGTGTTCAAAGATCTGCACAGGACCAGAAGAGATGTTTTTAGAGATGATAACAGAGCTCTGACAGGTATCAGCCAGTATTTTAGTCAGCCTTAAACATTATACCTGTAGTATAGTATAGACAGTATCTATTTGTACTTCTCTTATACTGTTTGTAGTTATTGCTTTTTATACACTTGCATTGTCAAatacaagtttatttattttatgtgtggTTCTTTTGTTAGGAATGTTATTTTCCTACAAGATTGTAGTTTCTGTCCTGTTTTTTTTCACTTGTTTATGTTCCAAATCTAAATATTGTCAAATtaatcaatgttttatttatttaaata

Function

symbol description
lyrm7 Predicted to be located in mitochondrial matrix. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 8. Orthologous to human LYRM7 (LYR motif containing 7).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070615-32 Predicted to be located in mitochondrial matrix. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 8. Orthologous to human LYRM7 (LYR motif containing 7).

Ensembl:

ensembl_id ENSDARG00000079815

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003666 False 632 mRNA 0.41 5 4964463 4969208
TCONS_00003667 True 378 lncRNA 0.32 2 4964510 4965110

Neighbor

gene id symbol gene type direction distance location
XLOC_001848 NA coding upstream 1163 4961815 ~ 4963300 (+)
XLOC_001847 slc46a2 coding upstream 29853 4924388 ~ 4934610 (+)
XLOC_001846 palm2akap2 coding upstream 53462 4874542 ~ 4911001 (+)
XLOC_001844 palm2akap2 coding upstream 133245 4806323 ~ 4831218 (+)
XLOC_001845 NA coding upstream 154212 4809883 ~ 4810251 (+)
XLOC_001850 CU074419.1 coding downstream 16842 4986050 ~ 4987483 (+)
XLOC_001851 NA coding downstream 18558 4987766 ~ 4996049 (+)
XLOC_001852 enoph1 coding downstream 56488 5025696 ~ 5037449 (+)
XLOC_001853 carm1l coding downstream 90983 5060191 ~ 5090392 (+)
XLOC_001854 zgc:113274 coding downstream 166634 5135842 ~ 5147582 (+)
XLOC_001842 dre-mir-430a-1 non-coding upstream 471105 4493277 ~ 4493358 (+)
XLOC_001841 NA non-coding upstream 622817 4335192 ~ 4341646 (+)
XLOC_001840 NA non-coding upstream 645600 4314963 ~ 4318863 (+)
XLOC_001857 NA non-coding downstream 263119 5232327 ~ 5234250 (+)
XLOC_001863 NA non-coding downstream 557982 5527190 ~ 5543141 (+)
XLOC_001864 NA non-coding downstream 618752 5587960 ~ 5588230 (+)

Expression


Co-expression Network