XLOC_018490 (si:ch211-221n20.7)


Basic Information

Item Value
gene id XLOC_018490
gene name si:ch211-221n20.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52702012 ~ 52705325 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036310
GTTTGATTTGGTGTTCAGTGGTGTAGATGGTGTTTGACAGTCAGCGAACAGTCATGCGTTTTCAGTCAAAAATACAGCGTTTACAGCACGATATGGATTATAATATTCTGGAGAGAATGATTACACGAGATTCACCAGAGTTCAGGAGCCGCGGTCGCGCTGGAGGAGCGTCCGAACAGAGAGCTTCATCTGCGGCCGTCGTGGAGAACCAGACAGCAGAGATGCAAAGACGAGGACGGAGGAAGACAGGCGTTCTTTCATTCTTCCGGAAAATGGGAAGAGCTATCCATAAGCTTTGCTGTATGGATGCAGCAGCAACATCTATAGTGGACCACACTGACCCATCTGGTAGCGCTCGTGCTGTCGCCTCAGAATCGAGAGAACGGACTAGAAAGATCTACCTCAAGAAAGATTGCAGCAAAGTCATCTTGAGAATCATCAAGGGCACCCCAGGGTCCCCGGATCCGTGTGGGGTCTGTGTTGTCTCCATTGACGTGGACCAACCTGGGATCTCCAGTGTGTCTGTTGACCCGGGACCTAATGGATTCTACTCGGATTCTTTTAGTCCGGGTCCACCTGGAGTCCTCCGCTTGTCCCTCGTCCTATGTCCATCTGGGGTGTTCAGTGTGTCTCTTAATGCTCGTCCATCTCGAGGCTGCAGGGTGTCTGTTGATCCCGGTTCGTCTGGGTTCTTCAGTGTGTCCTCTTATCCGGGTGCGTCTCGGGACTTCAGTGTATCTGGTAACCCGGATGCCTCTGGAGGCTGCAGGCTGTCTGTGGATACGGGTCTGTTTGGGGGCTGCGCAGTGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCAGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCAGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCAGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCAGCATGGCTGCTGATCCGGGTCCGTCTGATTGCAGCATGGCTGCTGATCCGGGTCCGTCTGATTGCGGCATGTC
>TCONS_00036309
GTTTGATTTGGTGTTCAGTGGTGTAGATGGTGTTTGACAGTCAGCGAACAGTCATGCGTTTTCAGTCAAAAATACAGCGTTTACAGCACGATATGGATTATAATATTCTGGAGAGAATGATTACACGAGATTCACCAGAGTTCAGGAGCCGCGGTCGCGCTGGAGGAGCGTCCGAACAGAGAGCTTCATCTGCGGCCGTCGTGGAGAACCAGACAGCAGAGATGCAAAGACGAGGACGGAGGAAGACAGGCGTTCTTTCATTCTTCCGGAAAATGGGAAGAGCTATCCATAAGCTTTGCTGTATGGATGCAGCAGCAACATCTATAGTGGACCACACTGACCCATCTGGTAGCGCTCGTGCTGTCGAATCGAGAGAACGGACTAGAAAGATCTACCTCAAGAAAGATTGCAGCAAAGTCATCTTGAGAATCATCAAGGGCACCCCAGGGTCCCCGGATCCGTGTGGGGTCTGTGTTGTCTCCATTGACGTGGACCAACCTGGGATCTCCAGTGTGTCTGTTGACCCGGGACCTAATGGATTCTACTCGGATTCTTTTAGTCCGGGTCCACCTGGAGTCCTCCGCTTGTCCCTCGTCCTATGTCCATCTGGGGTGTTCAGTGTGTCTCTTAATGCTCGTCCATCTCGAGGCTGCAGGGTGTCTGTTGATCCCGGTTCGTCTGGGTTCTTCAGTGTGTCCTCTTATCCGGGTGCGTCTCGGGACTTCAGTGTATCTGGTAACCCGGATGCCTCTGGAGGCTGCAGGCTGTCTGTGGATACGGGTCTGTTTGGGGGCTGCGCAGTGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCAGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCAGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCAGCTGCTCCGGGTCCGTCTGATTGCGGCATGTCTGCTGCTCCGGGTCCGTCTGATTGCAGCATGGCTGCTGATCCGGGTCCGTCTGATTGCAGCATGGCTGCTGATCCGGGTCCGTCTGATTGCGGCATGTC

Function

symbol description
si:ch211-221n20.7 Orthologous to human HCG22 (HLA complex group 22 (gene/pseudogene)).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-229 Orthologous to human HCG22 (HLA complex group 22 (gene/pseudogene)).

Ensembl:

ensembl_id ENSDARG00000114229

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036310 False 1141 mRNA 0.56 3 52702012 52705325
TCONS_00036309 True 1135 mRNA 0.56 3 52702012 52705325

Neighbor

gene id symbol gene type direction distance location
XLOC_018489 BX005301.1 coding downstream 11008 52686229 ~ 52691004 (-)
XLOC_018488 NA coding downstream 25545 52673108 ~ 52676467 (-)
XLOC_018487 si:ch211-221n20.4 coding downstream 35862 52663031 ~ 52666150 (-)
XLOC_018486 NA coding downstream 47043 52653500 ~ 52654969 (-)
XLOC_018485 si:ch211-221n20.2 coding downstream 59508 52639377 ~ 52642504 (-)
XLOC_018491 NA coding upstream 113482 52818807 ~ 52819616 (-)
XLOC_018492 tbc1d7 coding upstream 119890 52825215 ~ 52846212 (-)
XLOC_018493 CABZ01076171.1 coding upstream 121685 52827010 ~ 52827126 (-)
XLOC_018494 dspb coding upstream 146468 52851793 ~ 52882881 (-)
XLOC_018495 ctsbb coding upstream 181602 52886927 ~ 52902720 (-)
XLOC_017928 CU539064.1 misc downstream 42648311 10053405 ~ 10053701 (-)
XLOC_018481 NA non-coding downstream 157258 52541466 ~ 52544754 (-)
XLOC_018476 CU905509.1 non-coding downstream 557707 52144191 ~ 52144305 (-)
XLOC_018498 NA non-coding upstream 268535 52973860 ~ 52995339 (-)
XLOC_018501 NA non-coding upstream 582548 53287873 ~ 53292515 (-)
XLOC_018505 NA non-coding upstream 1099037 53804362 ~ 53810669 (-)

Expression


Co-expression Network