XLOC_018494 (dspb)


Basic Information

Item Value
gene id XLOC_018494
gene name dspb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52851793 ~ 52882881 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036313
ATGGACATGCAGGTGCCGTCAGTCTGCCTGCTCGTCCCGCCGCCAAATCCACTCGCCATCAGCCTTGCCAGCAAGAATTCGCAGTATTATGAGGCTATTCTCTCTGTGTGGAATCAGCTGTACATCAATGTTAAGAGCATGATCTCGTGGCAGTACTGTTTACTGGACATCGGCCGCATCAACTCACTCACCATGAGCATGCTTTCCAAAATGGGCCCGGATGAGTCGAACAACATCCTCCGCAGTCTGGAGATGCACTTCCAGGAGTTCAAGAGGCACAGTCAGGGCTCAGAGCTGTTCGGAGCCGAAGACCAGAAGCTGATTGAGAACCAGTTTGCAGGAGCACAGCAGCACTTCGACAAGCTGGTGGTGGATCTGCCCACATATGCCGCTCGAGGAGAAGGATCTGAATATTCAGCGGCGGTGAGCGTTAAAATGCTGAACGAACTCAACGCTCTGAGACTGAAGCTGGACGGAGCCGAATCCTCCCTCATCTCTTTCCTCTACATCGCTTTAGGAGACGACGGCCTGGAGGAGTGCGGACAGCACATCAGCAGCACACAGgCCTTTCAGAAGAACATCCAGGGTCTTCGAGGAGAGTTTGTGAGTCTTCGAGACGGCATTCAGGCTGAACTGAAAGATGCCGGCAACAGCGATAAAGGCAGATATCTGAGCGGTCAGCTGGACATCATGAACCAGAGACTCCTGAACCTGGACAATTACTTCACCACACATCTGCAGAGgctaGACTCAGTGAAGTCTCTGCTGAAGGATATGATGAAAGCTGAAGACGTGGTGAAGGTTTATGAAGCTCGACTGACGGAGAAAGAAACCGCGTCTTCAGACCCGGAGGAAGTGCAGAGATACCAGAAAGTGCTGCTGAGCATGCGCAGTGATCTGGAGCAGAAGCAGGATCTGCTGAATTCTCTGGTGGTGGATCTGAATCAGATGCAGAAGGTTAATGATCAGAGGGATCAGGGCCGCTACCAGTGCATCATCAACCTGACGCAGTACGCAGATCATGTCCATCAGCTGTCCGACCGCTGGAAACGCATCCACGTTCAGATCAACAACAGGCTGGTTGATCTGGACTCTTACCTGCCGCAGCTGAAGCGATACATGCAGTCCAGTTCTCAGCTGAGCGGCTGGATTGATGAAACCCAGAAACAGATTGATTCACAACACTCCGTCAAGATGGAGGACAGCGCAGCTTACACTCAACTACTGAACCAGCAGAAGGCATTAAACTCTGATATAAAGGCGAAGAGAGAGCTGATGGAGACGGTGCACAAAGACGGAGAAACCTGCATCAGTGCCATCAAGAATTACGAGCTTGAGTTGGCCACTTACAGCGCTGGACTGGAGACTCTGCTCAACATCCCGATCAAGAGGACCGTTCTGCAGTCTCCATCATCCTCCATCGCTGAAGAGGTGTCTTCTTTAAATGCGCACTACTTGGAACTGCTCACCCGCTCAAGCGATTACTACAAACTTCTTTTGGCATCCCAGAAAAACATGGAGGAGCTGAAGATACGAAATACCAGAATTGAGCTGCTGGAGGAGGAGCTTGAGCAACTGAGGGATGCCATCAAAGACCAAACTGCCAACAATGCATCTTTACAGGATGCTCTTCTGCAATACCAGCAAGAGCTGAACAATTCCCAAAGCCACCTACTCTCTCTGGAAGAGGTGAAAAGGACTGAAACCATGAAGTGCATGGCCACTCAGGAGAGCCTGGACTCCTCTAAAGACCGCCTCGAGGAGCTTACAGAGGAAGTACGTCGCCTGAAACTCCAACTGGAGGACatggagagaaaaaagaaaatcgtGGAAGAGCGCTACACATTTCTGCAAGAAGAACATGATGAAACTATGCGCAAGAAACTCAAGGAACTGGAACAAGCTAGCTGGGCTAAAATGGAGCTGGAGAAAACCGTATCCGAACGGAACCGAGAGTTGGAGCGTCTGCGCAAGGAGTTGGAAGACGAGGCTCGGCGCATAAAGGAGGCGCAAACAGAGCTAGCTAAGGTAAGACAGGAGCACAGCACAGAGATTCGAGAGGTAAAACAAACCTACGAGTCTCAAATCCTCGTAGCGCAATCCAGCATGCAGAAGCTTTCGCAGGAAAAAGAAAGTGATTCGGCTGCCATGAGTCTGGAGTTTGAAAGATTAGAGGGAGAATCTAGTGAATTAaaggagcagctgaagaggcttcgTATTTCTCTCAGCCAGGAGGAGGCGCAGAGGAGAATTCTGGAAGAGGAGGTAAAGAGACTCACTGCTTTAAATACTGAGGAATCCAGAAAGAGGCACGAGCTTGAGTCCCAAATTCAGGTGATGATGAGCCAGAAACGTGAAGGAGACAACAAAATGAGGGAGGTGCAGGAAAGCTCAAGTCGGACACTTCAGGATAAAATTAATGAGATCAATCGTCTCACTCGTAACTTTGAAGAAGAGCGACGTCTGAAAAGATCTTTAGAGACCGATAAGCGAAGACTGGAAGGGGATTTGGCTGTTCTGAAATCTAAGAATGAAACCACTAATGAGGAGCTAGTGCAACTTCGCTCCTCCCACCGGGAGTTGAGCCTCATTCGGGTGGAGCTGGAGGCACATGCACTTGAGAAGGGAAGGTCTGAGCAGACTATTGCACGCCTACAGGCTCGCATTCAAGAGCTCCAGGAGGAGCTGAAGAGGCTGGAAGGTGAATTAGAGAAGCAGAGACAAGTAGCAGAAGAGGAGGCCGGCAAGCGCAGGAGAACTGAGTCGCAGCTTGAAAAAAGTAGCCAAGCTATGCGAGAGTACACTACTACGATCACCACACTACGCACCAGCCAAGAAGAGACGAATATCGGAGCTAAACATGCGGATGAAAAATGCAAGCAACTGCAGGAAGCTCTTGACCGTGCCTCGAAGGAGAATAAAGTGACTTCTCAGAACCTTGCTGCTTTGAAAGCTGAGATAAATACGCTGAAACTACAGCTGACGCAGGAGCAGGGGCGTGTTCAAGACTCCAATCAGCGTTACGAGGCTCTTCATCGTAGTATGGAAGAGAAGAGTTGTGCGTTGAACGTAAGCTCTGGTGAAACTGAACGTCTGCAGAGGCTCACGGAAACTCTTACCAAGGATCGCCAGCGGGTAGAGGAGGAGTTGCGCGCTGTGCGTCTTGAACACGAGGAGTTGCTGAAAAACAAAAAGCGTGGAGATCGAGAAATGACCGAGCAAATTACAGCTTTGCAGAAACAGCTTGATTCCAGCCAGCGTGCCGGTGCAGAGCATGACAGGCTTATGCGGCAGCTCTCACGAGAGAGAGAAAAACTGCAAGTGGAGatagaaaatgtacaaaaacaaGCCAGAGAGACTTCCTCTGTAATCCAGACGTCCCAGTCTCAGTGCAGCAGCCTGAGTCAAGAAAGGGATGACCTCCTCAAGAAGATTACAACCATGGAACAGGAAATTGTGCGCTTGAAAAGGCTTGAAGATGAGCTAGCCCGTATAAAACTCTCACTGGAGTCAGAACTGCGATTTAAATCACAGCTGCAGGAGGAGAACAACAAGATCAAGAAGGATTTTACGCAGTGGAAGACCAAGTGTGCATCTCATGAGGAGCAACTTCGACAGCACGCCTCAGAACGCTCCGGCCTGGAGAGTCAGTTTAGCTCTGTCCGGACTGAGTTGGAGAGGCTGAGGACTCAACTCAGAGAAGCTGAAGAACGTTACAGGTTGCTCTTGCAGAACTTTGAACAAGAGAGAACAGAGATGCAGGCACTTCGAGACTCGAAGCAGGAGTTGCTGAGACTGCAGCAGAAACCAGATGGTGCTACCAAATATACTCAAACAGACCAAACTGATCCCTCCTCTTTGGTCTTCGAAGGTGTCCGCAAGAACATCACGGCACAACAGCTGCAAGACTGTGGTGTGATTGACAAGGTGATATTTGAGCAATTGATGACTGGCAAGAGGACTGTCCAGGATGTGTCTGTTGACATCAGGCTGAATCTGAAAGGGACAGGAGCTATTGCAGGGCTGGCAGCAGGACCTAAAGGCAAGATGACCTTCACCGAGGCTAAGAAACAAAACTTGATTTCAGACAAGAGTGGAAACATGTTGTTGGAGGCTCAAGCTGCCACAGGGTACATCATAGATCCCCAGGCTAATACAAAGATGACTGTTGAGGAGGCTTGCTTGAATGGAGTTGTGGATGAAGCTGACAAGAAACAACTGTTGATTGCAGAGGCCGCatgtgttgggtttagggatccCAAAACTGCAAAGCTCTTGCCAGTTAGCCAAGCCATGAAAAAGGGAATAATTGACCGGGAAACAACTCTGCGTCTCTTGCAAGCTCAGGAGGCAGCCGGAGGCATCCTTGATCCCATTCTTAGTGTCTATCTTCCCAAAGATACTGCCATGGACCGTGACCTTGTTGATGAGGATCTCTATCAAGCTCTAAATGCCAAGCCAGACTGTTATATTGATCCAGACACTGATCTACGTGCCAGCTATGTTACCCTCAAGAAGCAATGCAAGGCTGATCTTAACACTGGCTTGCTTCTGCTTCCAGCTCCTGAGAAACCAATTACTGTACAAGGACTACGTTCTGAAGTTAACGTATCAGATCTGGTGGATGCAAAATTGCTGGAACCTTCAGACATGAATCATCTGAGGGAGGGCAAGATTACCAGCCAAGAGATTGAGCACAGGTTGCGGGCGTATCTTCGAGGGTCAACCTGCATTGCTGGAATTTACGATGAGGCTGGTGAATGCACCTTGCCTATCTACCAAGCCATGAAGAATGGGCTTTTGCGACCAGGCACTACCCTGGAGCTTCTTGAGGCCCAGGCCGCCTCTGGTTTTGTGATCGATCCCATTAATAATGAGTACTACACAGTTGAGGAGGCCTGTCAGAAAGGACTTGTAGGTGTGGAGTTCAAAGACAAGCTCCTGTCTGCAGAGAAAGCAGTAACCGGATATAAAGAACCTGGAACCAACAAGTTGATCTCTCTTTTTGAAGCCATCGAGCGTGGTTTAATAGAGAAAGGTCATGGTATTCGCCTGCTGGAGGCTCAAATTGCTAGTGGTGGCATCATTGACCCTAAACACAGCCACCGAATTGATGTTGATGTGGCGTACCAAAGGGGTTACTTTGATCAAGGAATGAACCAGATTTTGAAAGATGAAGGAGATGACACAAAGGGATTCTTCGACCCAAACACTGAAGACAATTTGACTTACTTGGAACTAAAGAGCCGCTGCACCATTGATAAAAAGACAGGATTGGTGCTCCTGCCTATTCATGACAAGAAAAAAGCACAGCAGAAGAACTCGACAAGGAAGAGACGTGTACTTATCGTTGATCCTGACAGTAATAAAGAGATGACAGTGCGTGAAGCTTATGAGAAGAAACTCATAGACTACGAGACCTTTCTGGAATTATCTCAGCAAGAGTGTGAGTGGGAAGAAACGACCATCACTGCCCCGGATGGCTCAACCAGTACTGCTATAATGGACATGCAAACCGGCATTCAGTACAACCTGAAAGAATTGCTCGCTCAAGGAGTGATTGACCAAGATGTATTCAATAAATATCGTTCCGGAGGTATATCTGTTACAGAGTTGGCTGGTATGATCACCAAGAAGACAAAGATGCTAACTAATCCTGttagctcctcctcctcttcatcattatcatcatcatcatcatcatttacatCCCAGACAACAACGAAAAGCCAAATAGTCAAAACTGAAACCATAAAAAGCATTGAGAGCACCTCAGAGTACCTTCAGCAAGATCAATCCTCAGCAAACTCCTCCAAGCACATTTCCAGCATGTCAGTCAAACTATCCCCATTAGTAGAATCGATTGAAGAACAGAATCCAGTTGGAGCGATCTTTGACACTGAAAAGCTGGAGAAAATCACTGTTTGTGACGCCCTTAAGCGAGGAATGATTGATTCCATCACTGCACAACGACTTTTAGAGGCACAAGCTTGTACCGGTGGGATTGTAAGCCCTGATAATGGTCGTCGTATGTCTATTCAGGAGGCGACCAGAGTCGGTGTTCTGGATGACGAAATGGCTAACCGAATAAAACCTGCACAGAAGGCGTATATTGGATTTGAAGATGTGAAAACCAAACGTAAGATGTCTGCTGCAGAGGCTGTCAAAGAGAAGTGGCTGCCGTATGAAGCTGGCCAACGCTTTCTTGAATTTCAATACTTAACCGGAGGTCTCTTCGACCCTGAGCTTGGGTGCAGACGCTCACTTGAGGAGGCCTTGCAGATGGGTTGGCTGGATATGAGAGCGGCTCAGAGGCTCCAGGATACTCGCCACCACCCGAAGACCCTGACCTGCCCTAAAACCAAGCTGAGGATATCCTACAAGGAGGCTATGGAAGCTTGCATGAATGAGGAAAACACTGGTGTCCGGATGCTTCCGGCCGCTACAGTTTCATCCCGTGGAATCAGCAGCCCCTACAATCTCTCCAATCCAGGATCAGCCTCGGGATCTCGGAGCGGATCCCGCAGAGGCAGCGTAGATTACAGTTTATCCCCATCTTCATCTTCCAGATACAGCAGCTTCAGCTACAGCAGAACGTCTTTCAGCAGCAGATCACTCTCCTAA

Function

symbol description
dspb Predicted to enable cell adhesion molecule binding activity. Predicted to act upstream of or within cell-cell adhesion and intermediate filament cytoskeleton organization. Predicted to be located in cell junction; cytoplasm; and cytoskeleton. Is expressed in several structures, including epidermis; head; heart; otic vesicle; and solid lens vesicle. Human ortholog(s) of this gene implicated in Carvajal syndrome; arrhythmogenic right ventricular cardiomyopathy; arrhythmogenic right ventricular dysplasia 8; and dilated cardiomyopathy. Orthologous to human DSP (desmoplakin).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1662 Predicted to enable cell adhesion molecule binding activity. Predicted to act upstream of or within cell-cell adhesion and intermediate filament cytoskeleton organization. Predicted to be located in cell junction; cytoplasm; and cytoskeleton. Is expressed in several structures, including epidermis; head; heart; otic vesicle; and solid lens vesicle. Human ortholog(s) of this gene implicated in Carvajal syndrome; arrhythmogenic right ventricular cardiomyopathy; arrhythmogenic right ventricular dysplasia 8; and dilated cardiomyopathy. Orthologous to human DSP (desmoplakin).

Ensembl:

ensembl_id ENSDARG00000076673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036313 True 6624 mRNA 0.49 13 52851793 52882881

Neighbor

gene id symbol gene type direction distance location
XLOC_018492 tbc1d7 coding downstream 5581 52825215 ~ 52846212 (-)
XLOC_018493 CABZ01076171.1 coding downstream 24667 52827010 ~ 52827126 (-)
XLOC_018491 NA coding downstream 32177 52818807 ~ 52819616 (-)
XLOC_018490 si:ch211-221n20.7 coding downstream 146468 52702012 ~ 52705325 (-)
XLOC_018489 BX005301.1 coding downstream 160789 52686229 ~ 52691004 (-)
XLOC_018495 ctsbb coding upstream 4046 52886927 ~ 52902720 (-)
XLOC_018496 fdft1 coding upstream 24516 52907397 ~ 52939501 (-)
XLOC_018497 gata4 coding upstream 69235 52952116 ~ 52967878 (-)
XLOC_018498 NA coding upstream 90979 52973860 ~ 52995339 (-)
XLOC_018499 CABZ01066813.1 coding upstream 186840 53069721 ~ 53078607 (-)
XLOC_017928 CU539064.1 misc downstream 42798092 10053405 ~ 10053701 (-)
XLOC_018488 NA non-coding downstream 175326 52673108 ~ 52676467 (-)
XLOC_018486 NA non-coding downstream 196824 52653500 ~ 52654969 (-)
XLOC_018501 NA non-coding upstream 404992 53287873 ~ 53292515 (-)
XLOC_018505 NA non-coding upstream 921481 53804362 ~ 53810669 (-)
XLOC_018510 NA non-coding upstream 1163297 54046178 ~ 54046733 (-)
XLOC_018511 NA non-coding upstream 1167551 54050432 ~ 54051494 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_08100383_08125091 NA coding CI01000029 null 8099888 ~ 8125091 (-)