XLOC_018495 (ctsbb)


Basic Information

Item Value
gene id XLOC_018495
gene name ctsbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52886927 ~ 52902720 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036314
GAACAGAGGAACAGACTTTAATGCTCAGTGTGAGGatgtggcgtgtgtgtgtgttcgctctTCTGTCCGTTACGTGTGCTCGTCCACAGCTTCACACACATGATGAGATGATCAGCTTCATCAATGCAGCCAGAAGCACATGGACGGCAGGTGTCAATTTCGACaatgtgccaaaaaaatatctgaaatctCTGTGTGGGACGGTTCTGAAGGGCCCAAGATTGCCACATACTGTGAAACACTCCACAAACGTGAAGCTTCCAGACAGTTTTGACCTGCGGGACCAGTGGCCGAACTGTAAGACCCTCAACCAGATCCGAGACCAAGGGTCCTGCGGCTCCTGCTGGgcGTTCGGTGCAGTGGAGTCCATCTCTGATCGTATCTGCATCCACAGTAAAGGGAAGCAGTCTCCGGAGATCTCAGCTGAAGATCTGCTGTCCTGCTGTGATCAGTGTGGATTCGGctGTTCTGGAGGTTTTCCGGCTGAAGCCTGGGATTACTGGAGAAGATCCGGCCTAGTGACTGGAGGACTGTACAACTCTGATGTGGgctgcAGACCGTACTCCATCGCTCCCTGTGAGCATCATGTGAACGGCACTCGACCGCCGTGTTCAGGTGAACAGGACACACCCAAATGCACAGGGGTTTGTATCCCAAAATACAGCGTCCCCTACAAACAGGACAAACACTTTGGCTCTAAAGTGTACAACGTCCCATCGGACCAGCAGCAGATCATGACTGAACTTTACACCAACGGCCCTGTAGAGGCGGCGTTTACTGTTTATGAGGACTTTCCACTGTATAAGAGCgGTGTTTATCAGCATCTCACTGGTTCTGCTCTCGGTGGACACGCAGTGAAGATCCTCGGCTGGGGAGAAGAAAACGGGACACCCTTCTGGCTGGTGGCAAATTCCTGGaactcagactggggcgacaacgGTTATTTTAAGATCCTCAGAGGCCATGATGAATGTGGGATTGAGAGTGAGATGGTGGCTGGACTCCCTAAGctacacacacacacacacacacacacacacacacacacacagtcatgctgCTTCTAAATCACACTCAAACACAATCATTAAGTTGGGACTTTTAGTTTGATAAGAATGGCACGGAAATAAAAAATTACACaagtatgttttctttttttctattctgCAATATAATGAATAATGCAACCTCTACGCTACCGATGCAATAACATATTCTGTATTAAATAATAGGATATATGTAGTCTAGGGCTGCTTAATGTATTGCAAAATGATTGTTATAGTACTGCATATGCAATATAAGTATTGCAGATGTGTgataatttagatttattttatgcattggttgtttatctaaatttgaccaatccgATGGAGCCTCACTATCTTTAGCCCCGCCTCCACAGTGGTTGCTGTTCTGTCAGTAAGCTGGAGCATTTAAGTGTGGAAgtgtttatttactgtatatagcactttttaaacatattaatgcAGTCACAAAGTGTTTTACAAGTGAGAAACTACAACAAAAATGAACGATTCTATGAGGTACAacaacaaaattttaaataaaacacgtTTTATAAGCTGTCTAATTTACATATGAATAGAACATTCAATATACTGAAATGTTATTACCTTTCtgaggatcatgtgacactggagactggagtaatgatgctgaaaagaCAAACCAGTATTTTGACCTGGACCCGTGTTTACACAAGCATCTGATCGTACCAAGAGTTCTGCTGAACAGTGCCACAACAAACATCTCGCAGTCACAAAACTGCTGAAATCATTCAAGGAAGTCTTCAGCTGAGAGTGAGAGCAGGGTTTACCTCATTGCCATGGATTATGTCATAATGCTTATTAACTATGCAGACAGTGATTGGCTGATGGGAAGGGGGAGGAGTCTGTCAGTGTTATTAGTAAGTTCCTTGCTTTTGAACGTTTAGACATTAAATAAACATCTTCTGGTGTTACAAATAAATGTGTTTCTTAAAAAACATGGGCAAATTTGGGTTTATAGAACatacatttgcaaaaataaatatatttttggttgTC
>TCONS_00036315
ATCACATTAGTGAATCTTCAGCTTGAGGAACAGAGGAACAGACTTTAATGCTCAGTGTGAGGatgtggcgtgtgtgtgtgttcgctctTCTGTCCGTTACGTGTGCTCGTCCACAGCTTCACACACATGATGAGATGATCAGCTTCATCAATGCAGCCAGAAGCACATGGACGGCAGGTGTCAATTTCGACaatgtgccaaaaaaatatctgaaatctCTGTGTGGGACGGTTCTGAAGGGCCCAAGATTGCCACATACTGTGAAACACTCCACAAACGTGAAGCTTCCAGACAGTTTTGACCTGCGGGACCAGTGGCCGAACTGTAAGACCCTCAACCAGATCCGAGACCAAGGGTCCTGCGGCTCCTGCTGGG

Function

symbol description
ctsbb Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis and regulation of catalytic activity. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in diabetes mellitus. Orthologous to human CTSB (cathepsin B).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070323-1 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis and regulation of catalytic activity. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in diabetes mellitus. Orthologous to human CTSB (cathepsin B).

Ensembl:

ensembl_id ENSDARG00000101051

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036314 False 2069 mRNA 0.43 11 52886927 52902693
TCONS_00036315 True 375 mRNA 0.50 4 52898100 52902720

Neighbor

gene id symbol gene type direction distance location
XLOC_018494 dspb coding downstream 4046 52851793 ~ 52882881 (-)
XLOC_018492 tbc1d7 coding downstream 40715 52825215 ~ 52846212 (-)
XLOC_018493 CABZ01076171.1 coding downstream 59801 52827010 ~ 52827126 (-)
XLOC_018491 NA coding downstream 67311 52818807 ~ 52819616 (-)
XLOC_018490 si:ch211-221n20.7 coding downstream 181602 52702012 ~ 52705325 (-)
XLOC_018496 fdft1 coding upstream 4677 52907397 ~ 52939501 (-)
XLOC_018497 gata4 coding upstream 49396 52952116 ~ 52967878 (-)
XLOC_018498 NA coding upstream 71140 52973860 ~ 52995339 (-)
XLOC_018499 CABZ01066813.1 coding upstream 167001 53069721 ~ 53078607 (-)
XLOC_018500 CABZ01115113.1 coding upstream 267249 53169969 ~ 53176675 (-)
XLOC_017928 CU539064.1 misc downstream 42833226 10053405 ~ 10053701 (-)
XLOC_018489 BX005301.1 non-coding downstream 195923 52686229 ~ 52691004 (-)
XLOC_018488 NA non-coding downstream 210460 52673108 ~ 52676467 (-)
XLOC_018486 NA non-coding downstream 231958 52653500 ~ 52654969 (-)
XLOC_018501 NA non-coding upstream 385153 53287873 ~ 53292515 (-)
XLOC_018505 NA non-coding upstream 901642 53804362 ~ 53810669 (-)
XLOC_018510 NA non-coding upstream 1143458 54046178 ~ 54046733 (-)
XLOC_018511 NA non-coding upstream 1147712 54050432 ~ 54051494 (-)

Expression


Co-expression Network