XLOC_018504 (slc25a29)


Basic Information

Item Value
gene id XLOC_018504
gene name slc25a29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53600638 ~ 53624664 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036330
acatacacaccagCCAGCAGCAGGTGCTAGTCGAGCTACTAGCTGAAATTTTCCACTGCCGATTAGTGAGTTTCAGTGAGCGCAGAGTTACCGCAGCACCAACATTACACTAACCACCAGCAGCTCACCGGACAGGCCTGTGGAAATAAACTCAGATTAAGCAGCTCGACTGATCCCGAATCAGTCCTTGACGCGGGGATGGACTTTCTGGCTGGATGCATAGGAGGTGCTGCTGGGGTGCTGGTGGGTCATCcgtttgacactgttaagGTCCGTCTTCAGGTTCAGAGTGTGGATAAACCTCTTTACCGCGGTACTTTTCACTGTTTCCAGTCCATCATACGGCAAGAGTCGGTGCTGGGTCTTTATAAAGGCATCGGTTCCCCTATGATGGGCCTGACGTTCATCAACGCCATCGTGTTCGGCGTGCAGGGGAATGCCATGCGCAGACTGGGCGAAGATACGCCACTGAACCAGTTTCTGGCGGGCGCAGCGGCCGGTTCTATCCAGTGTGTGATCTGCTGCCCGATGGAGCTGGCCAAAACACGCATGCAGATGCAGGGCACGGGCGAGAAGAAGTCCTCCTCCCGGAAAGTCTACAAGAACTCGCTGGACTGCCTGGCGCGCATTTATCAGCGTGAGGGTTTGCGCGGCGTCAACAGAGGGATGGTGACCACGCTAATCCGAGAAACGCCAGGATTTGGGGTTTATTTTCTGGCTTATGATCTGCTGACGCGTTCGCTAGGCTGCGAGCCGGATGATCCCTACATGATCCCCAAACTCCTGTTCGCCGGCGGCATGTCTGGAATCGCATCCTGGTTATCCACGTACCCGGTGGACGTGATAAAATCACGGCTGCAGGCAGACGGAGTCGGAGGAAAGTACCAGTACAGCAGCATTATGGACTGCACACGCAAGAGCATCCAGCGCGAGGGCTTTCGAGTGTTCACCAGAGGACTCACGTCCACTCTACTGCGCGCGTTCCCGGTTAACGCGGCCACTTTCGCAACCGTCACCTTATTTTTGTTGTACGTTCGTCCGGATGAAGGGTCTAAGGATTGCGAAGCTGCTCATCACGCAACGCTGCAGCAACAAGCGCAACCGTCCAGTCTGTGAGTAAATATACAGCTGTGTTTCCATTATAAATTAGATTATGTGCAAACTTGGAATATCGCAGACATTCGCAATTTATGGGTCAAAGAGAATCGTAAAACAATAGTGAGAGAAGTAGTGCTGTAGGATTCTCCACTGTGGGGTTTGTTCTCCTCTAATAAATgagttgcgcctcagaagacgaaaCGCAATGAACGCcttttgaaggcgtgagacgggAGCACAGACAGATACTCAAGACggttctggaggtaataataatagaagaagaATAATACTGATGACGGACTGATTATAAGCAGCACTACAACAATTTAGATCTTTTACATCATGTCCTAACTACACGCTTCGGCTCATGTAGAAGCTTATTTTCAATGTTAACAAAACAAGATTTTGTCCTGAAGATGCGTGAAAGCGATGCATGACATTTCTAATCTATTTCTGCACCGTCACactagaacaacagcataaactactataaCAATAATCACCGCCGCTGCtcatcatgtgctttattcagtgttaaatgctgctAATATTTGTCCAACTTtatgggtgtactcacactaggctattcAAACCGTACCCAGACACGTTTGACCTCCATTTCCAGGTAGGATTGACAAATGTGAGCGCTCTGAAATCGGGCTCAGGTGCATTTCAgttggcctggcctggctggttggaagaggtgtgccagagcgcggttcggTTGGGCTTTGCCAAAGTACGCTTGTCTTCAGTTTCGAGCTCAGGGGCGCTTACAgtacgagacgtgacttttaaggga
>TCONS_00036331
acacacacataagatacatacatacacaccagCCAGCAGCAGGTGCTAGTCGAGCTACTAGCTGAAATTTTCCACTGCCGATTAGTGAGTTTCAGTGAGCGCAGAGTTACCGCAGCACCAACATTACACTAACCACCAGCAGCTCACCGGACAGGCCTGTGGAAATAAACTCAGATTAAGCAGCTCGACTGATCCCGAATCAGTCCTTGACGCGGGGATGGACTTTCTGGCTGGATGCATAGGAGGTCGGTTCATCTTTCTGACCAGTTCTCAGTCACGTCTGCTGGGTCCGTCTTCAGGTTCAGAGTGTGGATAAACCTCTTTACCGCGGTACTTTTCACTGTTTCCAGTCCATCATACGGCAAGAGTCG

Function

symbol description
slc25a29 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A29 (solute carrier family 25 member 29).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006844 acyl carnitine transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015227 acyl carnitine transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000057352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036330 False 1903 mRNA 0.50 4 53600638 53624645
TCONS_00036331 True 371 mRNA 0.50 2 53606783 53624664

Neighbor

gene id symbol gene type direction distance location
XLOC_018503 mettl24 coding downstream 165155 53408284 ~ 53435483 (-)
XLOC_018502 wasf1 coding downstream 234501 53300588 ~ 53366137 (-)
XLOC_018501 NA coding downstream 308123 53287873 ~ 53292515 (-)
XLOC_018500 CABZ01115113.1 coding downstream 423963 53169969 ~ 53176675 (-)
XLOC_018499 CABZ01066813.1 coding downstream 522031 53069721 ~ 53078607 (-)
XLOC_018505 NA coding upstream 179698 53804362 ~ 53810669 (-)
XLOC_018506 ppp2r5cb coding upstream 273529 53898193 ~ 53963515 (-)
XLOC_018507 hsp90aa1.2 coding upstream 342686 53967350 ~ 53981626 (-)
XLOC_018508 hsp90aa1.1 coding upstream 357653 53982317 ~ 54012043 (-)
XLOC_018509 si:dkey-241l7.6 coding upstream 388548 54013212 ~ 54034543 (-)
XLOC_017928 CU539064.1 misc downstream 43546937 10053405 ~ 10053701 (-)
XLOC_018498 NA non-coding downstream 605299 52973860 ~ 52995339 (-)
XLOC_018493 CABZ01076171.1 non-coding downstream 773512 52827010 ~ 52827126 (-)
XLOC_018491 NA non-coding downstream 781022 52818807 ~ 52819616 (-)
XLOC_018489 BX005301.1 non-coding downstream 909634 52686229 ~ 52691004 (-)
XLOC_018510 NA non-coding upstream 421514 54046178 ~ 54046733 (-)
XLOC_018511 NA non-coding upstream 425768 54050432 ~ 54051494 (-)
XLOC_018513 NA non-coding upstream 524533 54149197 ~ 54154203 (-)
XLOC_018514 NA non-coding upstream 540221 54164885 ~ 54173299 (-)

Expression


Co-expression Network