XLOC_018507 (hsp90aa1.2)


Basic Information

Item Value
gene id XLOC_018507
gene name hsp90aa1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 53967350 ~ 53981626 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036334
CTCTTCTTCTATTGGAAAAGCGTTAAGAAGCTTCGAGAGGGTTCAGGAGATCCGGCGGCTTCTCGAACAATCTCTGCCCGTGTATATAAGCTCGCCAGCGGACTCGAGAGCGACTAGAACCCGCTGACGCTGGAGAAGAGGAAATACAGCGAATAATTCAACAAAGAAACTCTCAGAATAAACCACTCGAGaTGCCTGAGGCTCACGAGCAGCAGATGATGGAGGATGAGGAGGTGGAGACGTTTGCGTTTCAGGCTGAGATCGCTCAGCTCATGTCTCTGATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGAGAGCTCATCTCCAACTCCTCTGATGCTTTGGACAAAATCCGCTATGAAAGTCTCACAGACCCAAGCAAGCTGGACTCAGGAAAAGACCTTAAAATCGAAATCATTCCCAACAAAGAAGAGCGCACGCTGACCATCATCGACACCGGCATCGGCATGACCAAAGCCGACCTGATCAACAATCTGGGCACCATCGCTAAATCCGGCACAAAGGCCTTCATGGAGGCTCTGCAGGCCGGAGCGGACATTTCTATGATCGGTCAGTTCGGTGTGGGCTTTTATTCTGCGTATCTGGTGGCCGAGAAAGTGACGGTCATCACCAAACATCTCGATGATGAGCAGTACGCGTGGGAATCGTCTGCTGGCGGATCGTTCACTGTCAAAGTGGATAACTCTGAGCCAATCGGCCGTGGCACAAAAGTGATTCTTCATCTGAAGGAGGATCAGACAGAGTACATCGAAGAGCGGCGGATCAAAGAGATCGTCAAGAAACACTCGCAGTTTATTGGATACCCTATCACACTCTTTGTGGAGAAGGAGCGCGATAAGGAGGTGAGCGATGATGAGGCGGAAGAGGAGAAAGAGAaggagaaagaagaagaagaagagggcGAGAAAGACGAAGACAAGCCTGAGATTGAAGACGTAGGCTCAGATGAGGACGACCACGATCATGGCGATAAGTGTGGcgacaagaagaagaaaaagaagaagatcaAGGAGAAATACATCGATCAGGAGGAGCTGAACAAAACCAAACCGCTGTGGACCCGCAACCCTGATGACATCACCAACGAAGAGTACGGAGAGTTTTACAAGAGCCTGACCAACGACTGGGAGGATCATCTGGCTGTTAAGCACTTTTCAGTGGAAGGTCAGCTGGAATTTCGCGCGCTGCTTTTTGTCCCTCGTCGAGCTCCATTCGATCTGTTTGAGAACAAGAAAAAGAAGAATAACATCAAACTGTACGTGCGCAGGGTGTTCATCATGGACAACTGTGACGAGCTCATACCAGAATATCTCAACTTTATTAAGGGTGTGGTGGACTCTGAGGATCTGCCTCTGAACATCTCCAGAGAAATGCTTCAACAGAGCAAAATCCTGAAGGTGATCCGCAAAAACCTGGTCAAGAAGTGTCTGGAGCTCTTCACCGAACTGGCAGAGGATAAAGACAACTATAAGAAATACTACGAGCAGTTCTCCAAAAACATCAAGCTGGGCATCCATGAAGACTCGCAGAACAGAAAGAAACTGTCAGAGCTGCTGCGCTACTACACATCCGCTTCAGGAGACGAGATGGTGTCGCTCAAAGATTACGTCACACGCATGAAGGACACGCAGAAGCACATCTACTACATCACCGGTGAGACCAAAGATCAGGTGGCGAACTCAGCGTTTGTGGAGCGCCTCCGTAAAGCAGGTCTGGAGGTGATCTACATGATCGAGCCCATCGACGAATACTGTGTTCAGCAGCTGAAGGAGTTCGAAGGCAAGAATCTGGTGTCGGTCACTAAAGAAGGCCTGGAGCTGCCCGAGGAtgaggaggagaagaagaagcAGGAGGAGAAGAAGAGCAAGTTTGAAAACCTCTGCAAGATCATGAAGGACATCCTGGAGAAGAAAGTGGAGAAGGTCACCGTCTCCAACCGTCTGGTGTCTTCGCCTTGCTGTATCGTCACCAGCACATACGGCTGGACGGCGAACATGGAGAGGATCATGAAGGCTCAGGCCCTCAGAGATAACTCCACTATGGGTTACATGGCTGCCAAAAAGCACCTGGAGATCAACCCTGACCACCCCATCGTGGAGACTCTCCGGCAGAAAGCGGAAGCTGACAAAAACGACAAATCTGTGAAGGATCTGGTGATCCTGCTGTTCGAGACGGCGCTCTTATCCTCAGGCTTCACACTGGACGACCCGCAGACACACTCCAACCGCATCTACAGGATGATCAAACTGGGCTTAGGCATTGATGAGGACGACCTGTCGGCAGAGGAGCCCAGTTCTGCCCCGATAGAGGAGATGCCGCCGCTGGAAGGAGACGACGACACATCCCGCATGGAGGAGGTGGACTGAGGAACACATCCAGCgtgtattattatgtaaattaatcTATTTATCTTCACATTACTGATGGTTCTTCATCTGCATTCCAGTTCTTCGGTTAAACCATGCAACCGTCAACCTTcccttgttttgtattttttgagtTGTGATCgcattgttttgtatttattaacattcCTATGTTGATTTTTGAGTGTTTAAGGGACTCAAGATGTAAAGTATGACACTGATACTGTATTGCTGACATGACAGATGctgaaataaagtgtttagaaTATCA
>TCONS_00036335
TACATCGATCAGGAGGAGCTGAACAAAACCAAACCGCTGTGGACCCGCAACCCTGATGACATCACCAACGAAGAGTACGGAGAGTTTTACAAGAGCCTGACCAACGACTGGGAGGATCATCTGGCTGTTAAGCACTTTTCAGTGGAAGGTCAGCTGGAATTTCGCGCGCTGCTTTTTGTCCCTCGTCGAGCTCCATTCGATCTGTTTGAGAACAAGAAAAAGAAGAATAACATCAAACTGTACGTGCGCAGGGTGTTCATCATGGACAACTGTGACGAGCTCATACCAGAATATCTCAGTAAGTGTCTGATCACAAACACTAATATCAGGTTTAATTGGTTGATGTTCACATTTtatgccttaaaaagtcttaaatacaCAGAAAAATTGTGTTGTAGGTATTAAATGATTGTAAATATGTCTTCATTTTAAATTTCTCTAAGTAAAGTTATCCAATCAGACAAATTACACACAATCCATCCTAATAGTTTTTTTGATGACACTttgcaataaggttgtattaatgaatattagttaatgcatttactaaaataaacaaacaataagcaATAAATTGggtacagtatttgttcatgttagtaaacactaataaaaatacatgttCATTGTTAATTTGTCAACTCACGATGCATAACTAAAGTAACTTGCataaatttgtatgttaataatgca

Function

symbol description
hsp90aa1.2 Predicted to enable ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Predicted to be involved in several processes, including cellular response to heat; protein stabilization; and response to cold. Predicted to be located in cytoplasm. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including myelin sheath; neuronal cell body; and perinuclear region of cytoplasm. Is expressed in several structures, including immature eye; mesoderm; musculature system; nervous system; and pericardial region. Orthologous to human HSP90AA1 (heat shock protein 90 alpha family class A member 1).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0009409 response to cold biological_process
GO:0046677 response to antibiotic biological_process
GO:0034605 cellular response to heat biological_process
GO:0050821 protein stabilization biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0009986 cell surface cellular_component
GO:0043209 myelin sheath cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0097718 disordered domain specific binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031001-3 Predicted to enable ATP binding activity; disordered domain specific binding activity; and unfolded protein binding activity. Predicted to be involved in several processes, including cellular response to heat; protein stabilization; and response to cold. Predicted to be located in cytoplasm. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including myelin sheath; neuronal cell body; and perinuclear region of cytoplasm. Is expressed in several structures, including immature eye; mesoderm; musculature system; nervous system; and pericardial region. Orthologous to human HSP90AA1 (heat shock protein 90 alpha family class A member 1).

Ensembl:

ensembl_id ENSDARG00000024746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036334 False 2667 mRNA 0.49 11 53967350 53981626
TCONS_00036335 True 693 lncRNA 0.35 2 53974052 53975812

Neighbor

gene id symbol gene type direction distance location
XLOC_018506 ppp2r5cb coding downstream 3835 53898193 ~ 53963515 (-)
XLOC_018505 NA coding downstream 156681 53804362 ~ 53810669 (-)
XLOC_018504 slc25a29 coding downstream 342686 53600638 ~ 53624664 (-)
XLOC_018503 mettl24 coding downstream 531867 53408284 ~ 53435483 (-)
XLOC_018502 wasf1 coding downstream 601213 53300588 ~ 53366137 (-)
XLOC_018508 hsp90aa1.1 coding upstream 691 53982317 ~ 54012043 (-)
XLOC_018509 si:dkey-241l7.6 coding upstream 31586 54013212 ~ 54034543 (-)
XLOC_018510 NA coding upstream 64552 54046178 ~ 54046733 (-)
XLOC_018511 NA coding upstream 68806 54050432 ~ 54051494 (-)
XLOC_018512 mgat2 coding upstream 85415 54067041 ~ 54075136 (-)
XLOC_017928 CU539064.1 misc downstream 43913649 10053405 ~ 10053701 (-)
XLOC_018501 NA non-coding downstream 674835 53287873 ~ 53292515 (-)
XLOC_018498 NA non-coding downstream 972011 52973860 ~ 52995339 (-)
XLOC_018493 CABZ01076171.1 non-coding downstream 1140224 52827010 ~ 52827126 (-)
XLOC_018491 NA non-coding downstream 1147734 52818807 ~ 52819616 (-)
XLOC_018513 NA non-coding upstream 167571 54149197 ~ 54154203 (-)
XLOC_018514 NA non-coding upstream 183259 54164885 ~ 54173299 (-)
XLOC_018520 NA non-coding upstream 289265 54270891 ~ 54271455 (-)

Expression


Co-expression Network