XLOC_001855 (si:ch211-249h16.8)


Basic Information

Item Value
gene id XLOC_001855
gene name si:ch211-249h16.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5149359 ~ 5156799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003676
GAATTCCATCAGAGTGACAAACGAACGAGTACAGTGAACAGTGATTTAACGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTCGACTGTGTTTTTTAATCGAGTTAAAACGATCACGACTGACTTTGTCAACGATAATCATCAAAGTGACACGATGGCTTCTCGTACACCTTCTACCACGATGAGAAGTCCAACAGAAAACCCAGAGAAAGGAAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGACCGGAGCAGAGTGGTTCCCTTTGAACCACGGTCAGAAGTCGACGATTTCGAGCACCTGCCTGTTCCAGGTCCTTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGATCTGTGAAGACTCTCAGTCgttgagtgttccgggcccctCCAGGATCAAGCATGATGTGCTGAATGCAGATCCGGCCCGTCCTGAATCCTCAACGGCCCTCACGGGTCATGTTGATACTGAGCTGCCAGGCCAGATCTGTGAAGATCCTCGGCTAATCAGTGTCCATGGCCCCTCCAATATTAAGACAATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGTAATGCGCCCTTTCCTGTGCTGTGACACAGATAAAGTCCAGCATCTTACACCACAACCTGAGCCAAAGCCAGAACCAGAGCCAGAGCCTGAGGATGAAGCAGTGCCTGTTAAAGTTACGCCTGGAATTGCAGATCCAGCTGACCCTGAGTCAGTCTGTCTGCCAGGCCAGGTTTCTGATGAACCTAACAAGCCTTTTGATCTCACTGTTGGATCTGTGGTGTCTCATTTTAAAGTCAGAAACATGATTGGACAAGGAGCTTTTGGCCAGGTGTATTTGGCGTCTGACGTATCAAGTGAAAAAGAAAAGgtTGCCCTGAAGTATATCATCAAGCAAAGCCATGACCGTTATCTCAAGATTgATGGTCATTCCAAACCTGTGCTTGCAGAAGTGGCAATCATGCGTAGGTTGATGAAAGCTCCGCAATGTCCGAACATCATCAGATTACATGACTGGATTGAGAATGAGAGCGAATGCATTCTCATTTTGGAGTACCCAGAGTCATGCCAGACTTTGGGTCGTTACATCAAAAAGACATCGGACATGGATGAAAACAAAGCACGCCGGTTAATGCGTCAGTTGGTCCAAGCTGTCAAGTTCTGCGTTGAACGTGGAGTTTTCCATGGTGATATACACTCGCAGAACATCCTGGTGACTACACCCCAGTTAGAGCTCAAATTGATCGACTTCGGTTGTGCTTGGCCAGTCACCCGTAGGCCTTTCTTCAGCTATAATTATCAAGGAGCTAGACGTTGCACGCCAGCTGAGGTTTTAATGCATCGCAAATTCTCCCCTACCATGGCAAATGTCTGGGCGATAGGCATCGTGCTGTTTGAAATATTGCATAGACGGTTGCCCTTTTACGACAGACCAACGATAATGGGTGGAGGCCTTCGCATGGACCCCACCTTATCTTCAGCATGCAAGGACCTGATCTCCCAGTGTTTGGTCCGCAATCCAGTTATGCGAATACAGTTACATCAGGTTGAAGTGCACCGGTGGTTCAATACAACGAGCCCAGATGCTGTGCAGCAGTGACACAAGAGGAGAACTATACAGTTGCCAAGAAGAGGAAAGCACTATTAAGAGCaccagaaattattattattaagttattaattactccctcatgtcattccaaacccttAAGACCTTACTTTTCTTCAGTGTCAGTTCATGGCGTGTGTTTGAGAGAGCTCTGTCCTGCACTGTATGCGTGACGCACTGCTAACATATACCTGgatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaTGCCAAGTgcgacacacacacagtgcagtaCAGGACTTCTGtagttattattttagttttaatatttttgtgtttttctttctgcatAAAAGAAGTTTCACTTCAAAATGACAGCAGTAGCTTTAAACCCCTGACACCTTCCTCTTATTTGAGATGAAATCCGAGAACTCTCTGATCCTCCATATACCTCAAGCATGCAGAGACgttccagaaaaggaaccaaaaacttcATCAAACCATGAGAGCTCTGTCCTGCACTGTATCCgtgtcgcactgctgacgttTACCT
>TCONS_00003677
CGAACGAGTACAGTGAACAGTGATTTAACGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTCGACTGTGTTTTTTAATCGAGTTAAAACGATCACGACTGACTTTGTCAACGATAATCATCAAAGTGACACGATGGCTTCTCGTACACCTTCTACCACGATGAGAAGTCCAACAGAAAACCCAGAGAAAGGAAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGACCGGAGCAGAGTGGTTCCCTTTGAACCACGGTCAGAAGTCGACGATTTCGAGCACCTGCCTGTTCCAGGTCCTTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGATCCCCAGCTGTTGAGTATTCCGGGCCCCTCCAGGATCAATGCAGATCCGGCCCGTCCTGAGTCCTCGACGGCCCTCACAGGTCATGTTGACCCTGAGCTTGTGCGTCCGCCAGTCCAGGTCTGCGACCGTCTTGAGTCGTTAGCTGTTCCAGGAACATCCAAGATCAAGCCAACGACCATCGCAGATCATGTTGACCCTGAGCAGATGCGTCCGCCAGTCCAGATCTGTGAAGACTCTCAGTCgttgagtgttccgggcccctCCAGGATCAAGCATGATGTGCTGAATGCAGATCCGGCCCGTCCTGAATCCTCAACGGCCCTCACGGGTCATGTTGATACTGAGC
>TCONS_00003678
TCGAGTTAAAACGATCACGACTGACTTTGTCAACGATAATCATCAAAGTGACACGATGGCTTCTCGTACACCTTCTACCACGATGAGAAGTCCAACAGAGAAAACCCAGAGAAAGGAAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGACCGGAGCAGAGTGGTTCCCTTTGAACCACGGTCAGAAGTCGACGATTTCGAGCACCTGCCTGTTCCAGGTCCTTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGATCCCCAGCTGTTGAGTATTCCGGGCCCCTCCAGGATCAATGCAGATCCGGCCCGTCCTGAGTCCTCGACGGCCCTCACAGGTCATGTTGACCCTGAGCTTGTGCGTCCGCCAGTCCAGATCTGTGAAGATCCTCGGCTAATCAGTGTCCATGGCCCCTCCAATATTAAGACAATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGGTGAGTCCTCCTGAATTTGGTTCATTTTATTTCTGCCATCTGTCATTTTTcatgctttgttgtttttagcttAAACATCAGACAGTGTCACTTGTTGTACTATTGGTTGTGTATTAATTATTAGCTGCAGCTCTGCTCATGGAGATGTTTCTGTTTGctttcttcattttagaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTT
>TCONS_00003679
ttttatttttgttgtttcttgTGTGTGATTGTCTTGATATGTCTACTTACAGCAGTTTGTCTATTTTAAACCTGTGGTTAAAGAGTTTTCTAACATTTCCCTGTTCATTTTCTTTACTTTAGAAAACCCAGAGAAAGGAAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGACCGGAGCAGAGTGGTTCCCTTTGAACCACGGTCAGAAGTCGACGATTTCGAGCACCTGCCTGTTCCAGGTCCTTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGATCCCCAGCTGTTGAGTATTCCGGGCCCCTCCAGGATCAATGCAGATCCGGCCCGTCCTGAGTCCTCGACGGCCCTCACAGGTCATGTTGACCCTGAGCTTGTGCGTCCGCCAGTCCAGATCTGTGAAGATCCTCGGCTAATCAGTGTCCATGGCCCCTCCAATATTAAGACAATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTAAAATTGATGGGACTGATGGTGAGTCCTCCTGAATTTGGTTCATTTTATTTCTGCCATCTGTCATTTTTcatgctttgttgtttttagcttAAACATCAGACAGTGTCACTTGTTGTACTATTGGTTGTGTATTAATTATTAGCTGCAGCTCTGCTCATGGAGATGTTTCTGTTTGctttcttcattttagaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTT

Function

symbol description
si:ch211-249h16.8 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003676 False 2339 mRNA 0.47 10 5149359 5156799
TCONS_00003677 False 763 lncRNA 0.53 2 5149380 5152046
TCONS_00003678 False 791 lncRNA 0.49 3 5149469 5152401
TCONS_00003679 True 813 processed_transcript 0.46 2 5151349 5152401

Neighbor

gene id symbol gene type direction distance location
XLOC_001854 zgc:113274 coding upstream 1777 5135842 ~ 5147582 (+)
XLOC_001853 carm1l coding upstream 58967 5060191 ~ 5090392 (+)
XLOC_001852 enoph1 coding upstream 111910 5025696 ~ 5037449 (+)
XLOC_001851 NA coding upstream 153310 4987766 ~ 4996049 (+)
XLOC_001850 CU074419.1 coding upstream 161876 4986050 ~ 4987483 (+)
XLOC_001856 cdc42se2 coding downstream 2676 5159475 ~ 5221537 (+)
XLOC_001857 NA coding downstream 75528 5232327 ~ 5234250 (+)
XLOC_001858 sptlc1 coding downstream 77528 5234327 ~ 5265160 (+)
XLOC_001859 ror2 coding downstream 111255 5268054 ~ 5407509 (+)
XLOC_001860 si:dkey-60d5.3 coding downstream 252709 5409508 ~ 5410985 (+)
XLOC_001848 NA non-coding upstream 186059 4961815 ~ 4963300 (+)
XLOC_001845 NA non-coding upstream 339108 4809883 ~ 4810251 (+)
XLOC_001842 dre-mir-430a-1 non-coding upstream 656001 4493277 ~ 4493358 (+)
XLOC_001863 NA non-coding downstream 370391 5527190 ~ 5543141 (+)
XLOC_001864 NA non-coding downstream 431161 5587960 ~ 5588230 (+)
XLOC_001867 NA non-coding downstream 631608 5788407 ~ 5793526 (+)
XLOC_001868 NA non-coding downstream 723901 5880700 ~ 5881233 (+)

Expression


Co-expression Network