XLOC_001856 (cdc42se2)


Basic Information

Item Value
gene id XLOC_001856
gene name cdc42se2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5159475 ~ 5221537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003680
AAGCAGAAAAGACACAAAGAAAGACCTCTGGTGTGCGTGTGAAGTGTACCGCATGCTGTCTGTGTACGTGCGCCGGTTTTCTGTTCACTCTGCCGGAGGATCGACTCATCTGATGTTCGGCGCAGGTGGATCATTTACCGCATTGATCATCAGCCAAGCCTCGAAAATCAGCATCAGCACCGGGCGagtctgctgcAGTCCACCGGGAGTCACATTTCGGTCGTGAACaaacactttgagagccttcctgacgtaatggttttccaccaaggcagccCTGGTCGTTGAAATAGAATGGGCTAAACTGGCAGTgcgcgggttaaaagaaccaaaacaaagacatcgGTTCcagcacGTCTGCTAATTGAGCGGTGCCGTAAACAAGCTTCCAGTCAGGATCTGTTCTGGCGTTCTTATTGCTGCCTGAATCCAGCACCTCAGACTGAACATCTCCGCTTTCAGCACTGACTGGACCTTCCAAACGTGCCCTGTCCAGACTCCCAGAGCCCCCGCGGGCCCACGGGCACAGCCGCACTTCAGGACTGTCTGCTAGTCATGAGTGAATTCTGGTTGTGCTTCAACTGCTGTATCGCCGAGCAGCCGCAGCCGAAGAGGCGGAGACGTATAGATCGCAGTATGATTGGCGAGCCAACCAATTTTGTCCACACGGCCCATGTAGGCTCTGGAGATCTCTTCACTGGCATGAACTCTGTAAACTCCATTCAGAACCAAATGCAGTCGAAAGGAGGGTATGGAGGAGAGGCGATGTCTGTTAATGTACAGATGCAGCTGGTGGATACAAAAGCAGGATAATGTGTGCTGTTGGAAGGGGTTCCACGATGTGCATTTTCTGCTCAGCGGTTCCCCTCCAACATCTTCCCATGTGCCCTCAATGGCAACTTTTCACCTCATTCTTCTACCCAGCAAACACATGGACAGTTGTGCACTCCATGGTAAAGAGGTCGTCCTGGCCATCGGACATCAGGACGCCACAGCGCTTCAGTGTTGTGTCCGTTTCTGCTCCATAACAGACGTTCGCTCGCATGCCCTCTCAACACTCACCAGCCTACAAGTGCAACGTGTGTCCCTGCTTTCTCCTGTGGTTTGCCGTAAACTCTCGCTTTTTCCATCAtgcgtgttttatttttgtgGGTCCAGACTGATGAGAACAGGGTCGGTTCTCATTCGCTTGCCGTGAAaagactgcttttttttttttggtttcaatAAATCAACACGGAGCCGACGACAATGTTTGTAAAGGAAAGTGCAGTGCCAAAACTGCTCAGTGCAATGGAAAGTACTTTGTGTTTCAGCAAGAGCACAACAAATGCCATTTTTTTTAAGGAAGCGTGATTCTTGCTttgctgtttacagtgtctgaTTTGCAATTCCCGTTTCTTTTCCCTTCTTGTTTTAGAGTTCAAATCTGATGTTGAAAGGCATGAGCGGCATTTCACCCTCTGCTGTGTCGATGTACATCCGTAACTTGACGTGAAGCAACTCGAGCTATAGATAGTGTCCAGATAAAATGTATACAAAGATTTTGTTTAGGGCTTTTTATTGATGTAGTCATTATGAGCTATGGGGCTTTTCAATGAATAAGGTAAGACACCAGTGACAGGGTTTTTTTAACCGCACCCAAGTAGCATGGCTGtaaaatattgtacattttataaGCCTGTCTCTACACTGCAATGTTGCGATTCTGATTTTGTCCTCTcgtgtggcacagatcggatatggcccacacacagttagagtcagaattattagatctcttgtgaatagtttttttctttttctaaatatttccgaaatgatgtttaacagagcaaggcatttttcacagtatttcctataatagtttttcttctggaaaaagtcttatttgttttattttggatagaataaaagcagtttttaattttttaaaaccca
>TCONS_00003681
ACAGAATCTTCTGGTGTCCTGCAGGTCTGCTAATTGAGCGGTGCCGTAAACAAGCTTCCAGTCAGGATCTGTTCTGGCGTTCTTATTGCTGCCTGAATCCAGCACCTCAGACTGAACATCTCCGCTTTCAGCACTGACTGGACCTTCCAAACGTGCCCTGTCCAGACTCCCAGAGCCCCCGCGGGCCCACGGGCACAGCCGCACTTCAGGACTGTCTGCTAGTCATGAGTGAATTCTGGTTGTGCTTCAACTGCTGTATCGCCGAGCAGCCGCAGCCGAAGAGGCGGAGACGTATAGATCGCAGTATGATTGGCGAGCCAACCAATTTTGTCCACACGGCCCATGTAGGCTCTGGAGATCTCTTCACTGGCATGAACTCTGTAAACTCCATTCAGAACCAAATGCAGTCGAAAGGAGGGTATGGAGGAGAGGCGATGTCTGTTAATGTACAGATGCAGCTGGTGGATACAAAAGCAGGATAATGTGTGCTGTTGGAAGGGGTTCCACGATGTGCATTTTCTGCTCAGCGGTTCCCCTCCAACATCTTCCCATGTGCCCTCAATGGCAACTTTTCACCTCATTCTTCTACCCAGCAAACACATGGACAGTTGTGCACTCCATGGTAAAGAGGTCGTCCTGGCCATCGGACATCAGGACGCCACAGCGCTTCAGTGTTGTGTCCGTTTCTGCTCCATAACAGACGTTCGCTCGCATGCCCTCTCAACACTCACCAGCCTACAAGTGCAACGTGTGTCCCTGCTTTCTCCTGTGGTTTGCCGTAAACTCTCGCTTTTTCCATCAtgcgtgttttatttttgtgGGTCCAGACTGATGAGAACAGGGTCGGTTCTCATTCGCTTGCCGTGAAaagactgcttttttttttttggtttcaatAAATCAACACGGAGCCGACGACAATGTTTGTAAAGGAAAGTGCAGTGCCAAAACTGCTCAGTGCAATGGAAAGTACTTTGTGTTTCAGCAAGAGCACAACAAATGCCATTTTTTTTAAGGAAGCGTGATTCTTGCTttgctgtttacagtgtctgaTTTGCAATTCCCGTTTCTTTTCCCTTCTTGTTTTAGAGTTCAAATCTGATGTTGAAAGGCATGAGCGGCATTTCACCCTCTGCTGTGTCGATGTACATCCGTAACTTGACGTGAAGCAACTCGAGCTATAGATAGTGTCCAGATAAAATGTATACAAAGATTTTGTTTAGGGCTTTTTATTGATGTAGTCATTATGAGCTATGGGGCTTTTCAATGAATAAGGTAAGACACCAGTGACAGGGTTTTTTTAACCGCACCCAAGTAGCATGGCTGtaaaatattgtacattttataaGCCTGTCTCTACACTGCAATGTTGCGATTCTGATTTTGTCCTCTcgtgtggcacagatcggatatggcccacacacagttagagtcagaattattagatctcttgtgaatagtttttttctttttctaaatatttccgaaatgatgtttaacagagcaaggcatttttcacagtatttcctataatagtttttcttctggaaaaagtcttatttgttttattttggatagaataaaagcagtttttaattttttaaaaccca

Function

symbol description
cdc42se2 Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE2 (CDC42 small effector 2).

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-45 Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE2 (CDC42 small effector 2).

Ensembl:

ensembl_id ENSDARG00000094577

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003680 False 1941 mRNA 0.46 6 5159475 5221537
TCONS_00003681 True 1610 mRNA 0.45 4 5203532 5221537

Neighbor

gene id symbol gene type direction distance location
XLOC_001855 si:ch211-249h16.8 coding upstream 2676 5149359 ~ 5156799 (+)
XLOC_001854 zgc:113274 coding upstream 11893 5135842 ~ 5147582 (+)
XLOC_001853 carm1l coding upstream 69083 5060191 ~ 5090392 (+)
XLOC_001852 enoph1 coding upstream 122026 5025696 ~ 5037449 (+)
XLOC_001851 NA coding upstream 163426 4987766 ~ 4996049 (+)
XLOC_001857 NA coding downstream 10790 5232327 ~ 5234250 (+)
XLOC_001858 sptlc1 coding downstream 12790 5234327 ~ 5265160 (+)
XLOC_001859 ror2 coding downstream 46517 5268054 ~ 5407509 (+)
XLOC_001860 si:dkey-60d5.3 coding downstream 187971 5409508 ~ 5410985 (+)
XLOC_001861 nfil3 coding downstream 192687 5414224 ~ 5419256 (+)
XLOC_001850 CU074419.1 non-coding upstream 171992 4986050 ~ 4987483 (+)
XLOC_001848 NA non-coding upstream 196175 4961815 ~ 4963300 (+)
XLOC_001845 NA non-coding upstream 349224 4809883 ~ 4810251 (+)
XLOC_001842 dre-mir-430a-1 non-coding upstream 666117 4493277 ~ 4493358 (+)
XLOC_001863 NA non-coding downstream 305653 5527190 ~ 5543141 (+)
XLOC_001864 NA non-coding downstream 366423 5587960 ~ 5588230 (+)
XLOC_001867 NA non-coding downstream 566870 5788407 ~ 5793526 (+)
XLOC_001868 NA non-coding downstream 659163 5880700 ~ 5881233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G419360 NA non-coding CI01000304 null 2088124 ~ 2114397 (-)