XLOC_001865 (pdzph1)


Basic Information

Item Value
gene id XLOC_001865
gene name pdzph1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5644356 ~ 5655109 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003689
CTCACCATCGGCTCGGATATTGGTCGAACGCCCAACACTCCACGTCCCGCGTGCAGGGGCTACTTACATAAGCGAACACAGTCGAGTTTCCTGAAGGGCTGGAGAAAGAGATGGTTCGTGCTCAGACATGACTGCTGCCTCTACTACTACAGAAACAAGCGCGATGAAGGGAAGAGTCGGGCCTTGTCTGTGATGAGTCTGGAGGGGGCGCTGGTGGAGGCTGACAGCACTTTAGGAAAGCCCTTCGTCTTCAGATGCTGCCCTGTTTCTGGCAACAGAGCTTACTACTTGTGTGCTACATCAAACCAGGAGATGAAAAGGTGGCTGGAGGCTATGGGTAGAGCTGTTCATCCCATCACTCAGAATCACGTGTGGGTGGACGTCACTCGGCACAACTCAAATCTGCCCCCGCTGGCGGTCAAGAACCCAGAATGCCTTGGTTTGCTCCATCAGCTGGACAGAAGCAAAGACTCATGGGTGCAGTACTACTGCGTGCTGAAAGACGGATGCCTCTATTTCTACGTCAGTATTCGTTCAACATCCGCCATAGGAGGAATCTATCTACATGGATACACAGTGAAAGATCAGCCGCTGGGGTCCAGAAGATCCACCATTGAGCTCAGGCCTCCGTCTGATGAGTTTAAAGTCTTCTACCTCTGTGCCGAAAATGGAAACGAGAACAAACGATGGATCAGTGCTATTAAATCCTCTATAACAAAATGGCTGCCACTGCATCAAGCAATTCAAGACTACATGAGTCGGCCAGCCGAGGAAACGAGAATGTGA
>TCONS_00003690
attattatgtatatcatattatatataatatgtattagGAATCACGTGTGGGTGGACGTCACTCGGCACAACTCAAATCTGCCCCCGCTGGCGGTCAAGAACCCAGAATGCCTTGGTTTGCTCCATCAGCTGGACAGAAGCAAAGACTCATGGGTGCAGTACTACTGCGTGCTGAAAGACGGATGCCTCTATTTCTACGTCAGTATTCGTTCAACATCCGCCATAGGAGGAATCTATCTACATGGATACACAGTGAAAGATCAGCCGCTGGGGTCCAGAAGATCCACCATTGAGCTCAGGCCTCCGTCTGATGAGTTTAAAGTCTTCTACCTCTGTGCCGAAAATGGAAACGAGAACAAACGATGGATCAGTGCTATTAAATCCTCTATAACAAAATGGCTGCCACTGCATCAAGCAATTCAAGACTACATGAGTCGGCCAGCCGAGGAAACGAGAATGTGA

Function

symbol description
pdzph1 Orthologous to human PDZPH1P (PDZ and pleckstrin homology domains 1, pseudogene).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-385 No description available

Ensembl:

ensembl_id ENSDARG00000102251

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003689 False 786 mRNA 0.51 6 5644356 5655109
TCONS_00003690 True 462 mRNA 0.46 4 5645887 5655109

Neighbor

gene id symbol gene type direction distance location
XLOC_001864 NA coding upstream 56126 5587960 ~ 5588230 (+)
XLOC_001863 NA coding upstream 101215 5527190 ~ 5543141 (+)
XLOC_001862 auh coding upstream 168666 5422575 ~ 5475690 (+)
XLOC_001861 nfil3 coding upstream 225100 5414224 ~ 5419256 (+)
XLOC_001860 si:dkey-60d5.3 coding upstream 233371 5409508 ~ 5410985 (+)
XLOC_001866 pam coding downstream 34401 5689510 ~ 5787286 (+)
XLOC_001867 NA coding downstream 133298 5788407 ~ 5793526 (+)
XLOC_001868 NA coding downstream 225591 5880700 ~ 5881233 (+)
XLOC_001869 map3k1 coding downstream 299678 5954787 ~ 6004863 (+)
XLOC_001870 hmgcs1 coding downstream 355461 6010570 ~ 6034397 (+)
XLOC_001857 NA non-coding upstream 410106 5232327 ~ 5234250 (+)
XLOC_001851 NA non-coding upstream 648307 4987766 ~ 4996049 (+)
XLOC_001850 CU074419.1 non-coding upstream 656873 4986050 ~ 4987483 (+)
XLOC_001871 NA non-coding downstream 461185 6116294 ~ 6116936 (+)
XLOC_001884 NA non-coding downstream 1099161 6754270 ~ 6755766 (+)
XLOC_001890 BX537303.1 non-coding downstream 1918207 7573316 ~ 7578051 (+)

Expression


Co-expression Network