XLOC_001868



Basic Information


Item Value
gene id XLOC_001868
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5880700 ~ 5881233 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00005677
ATCTTAAACCACcacaaagtgatgtcatgtctTGAAAGCCCATGTTTACATCAGTTACTTGAGAGGAGAATGGTGACATCAATCATTACAGCTTGTAAACAATGCATACCTGGTACACTGAGTCACTTTTACACGTCTGCCAAAATTGTTTTATATGTACAGTAAatgaaattgaataaaaatagatTATAAAAGTGCACAAGATATACTGAAGCAACAAAACATCAAGCAACACCCGTTGAATTTGTTGTGCAGTCAGTGGCATATCGCAAAAtgcagaggcccccctgcagggatcgctgacggggccccctgatgaagtggGGGGgtatacgtcatacgtcaatttgcatatcactgacgtcatcacgttctaccatttgtttgtttaacagcctatggttaataaaggggtatatataattgcactacactttatataagcatgtttatttaactaaatttattgctgtttgaatacagtatgtcattatagatgtgtaacgttagtgaatgtgcagtaatctctcatat

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00005677 True 534 lncRNA 0.37 1 5880700 5881233

Neighbor


gene id symbol gene type direction distance location
XLOC_001867 NA coding upstream 87174 5788407 ~ 5793526 (+)
XLOC_001866 pam coding upstream 93414 5689510 ~ 5787286 (+)
XLOC_001865 pdzph1 coding upstream 225591 5644356 ~ 5655109 (+)
XLOC_001864 NA coding upstream 292470 5587960 ~ 5588230 (+)
XLOC_001863 NA coding upstream 337559 5527190 ~ 5543141 (+)
XLOC_001869 map3k1 coding downstream 73554 5954787 ~ 6004863 (+)
XLOC_001870 hmgcs1 coding downstream 129337 6010570 ~ 6034397 (+)
XLOC_001871 NA coding downstream 235061 6116294 ~ 6116936 (+)
XLOC_001872 tln1 coding downstream 240325 6121558 ~ 6313905 (+)
XLOC_001873 tpm2 coding downstream 436994 6318227 ~ 6375394 (+)
XLOC_001857 NA non-coding upstream 646450 5232327 ~ 5234250 (+)
XLOC_001851 NA non-coding upstream 884651 4987766 ~ 4996049 (+)
XLOC_001884 NA non-coding downstream 873037 6754270 ~ 6755766 (+)
XLOC_001890 BX537303.1 non-coding downstream 1692083 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1927478 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1962173 7843406 ~ 7849873 (+)

Expression



Co-expression Network