XLOC_001871


Basic Information

Item Value
gene id XLOC_001871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6116294 ~ 6116936 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005819
TTACGACACGCATTCGATAATCGTTGGAGACCTCCAGACAGACCTCACCTTATCTTTAGGTAAGCAGACTCTTCTGAACAATCgtttgttttgtaatttgatgtgGTGAGATTTAAACACGTTCATGAATCTTGAGTATGCAGACATATTTCACACTCTCTCTGTCACTTTTCAGATTGCCTGGACCtgatttcccagtgtttggtCCGCAATCCAGAGAAGCGACTGCAGTTACATCAGTTAGAAGAGCACCGGTGGTTCAATCCAACGAGCCCAAATCCTGTGCAGCAGTGAGACAAGAGGAGGTAGAGGAACACACCGAGCACAAAACTACATCTTCAGTCTTTCTTTGCTTCATGCTATTCCTGTTctttcctcttctgctctttttAGAGTCACAAGTCTTATTTGACAGCCCTTCATATCACTGCTTAAataactttgtgttgtttttcttcattttagaaaacaCTAAAGAAGCGAAGAGGAGAACAGCAGCATTTCCAGaaatttcacaagactgttaaagttattaattactccctcatgtcattccaaacccctcaGACCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005819 True 643 lncRNA 0.42 1 6116294 6116936

Neighbor

gene id symbol gene type direction distance location
XLOC_001870 hmgcs1 coding upstream 81897 6010570 ~ 6034397 (+)
XLOC_001869 map3k1 coding upstream 111431 5954787 ~ 6004863 (+)
XLOC_001868 NA coding upstream 235061 5880700 ~ 5881233 (+)
XLOC_001867 NA coding upstream 322768 5788407 ~ 5793526 (+)
XLOC_001866 pam coding upstream 329008 5689510 ~ 5787286 (+)
XLOC_001872 tln1 coding downstream 4622 6121558 ~ 6313905 (+)
XLOC_001873 tpm2 coding downstream 201291 6318227 ~ 6375394 (+)
XLOC_001874 APH1A coding downstream 266334 6383270 ~ 6409781 (+)
XLOC_001875 reep5 coding downstream 379249 6496185 ~ 6518065 (+)
XLOC_001876 si:ch211-57m13.1 coding downstream 496343 6613279 ~ 6618833 (+)
XLOC_001864 NA non-coding upstream 528064 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 573153 5527190 ~ 5543141 (+)
XLOC_001857 NA non-coding upstream 882044 5232327 ~ 5234250 (+)
XLOC_001884 NA non-coding downstream 637334 6754270 ~ 6755766 (+)
XLOC_001890 BX537303.1 non-coding downstream 1456380 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1691775 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1726470 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1753673 7870609 ~ 7901888 (+)

Expression


Co-expression Network