XLOC_001889 (purg)


Basic Information

Item Value
gene id XLOC_001889
gene name purg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7563755 ~ 7565074 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003737
CTCCTGTGTGCTGGAGGGAGGGGGGATTGGGTCATTGAGTTCATTCGCACTACAGCAGCGGCGCCCTCCATAGAGATccgctgtctctctctctcactctcactccAGCTGGCAAGAATATGTGTCAGATGGATGGTGAGGCGAAAAACAAGATCTTTTAAAATATGGTGCAAACGGTACGTGCCTCCGCGCTTCGCTTGACCTTTCATCAGGACAAAGGAAGTCGATGAGCCGTTTTAAGCGGAGCCGCTGCTGCTGCCATTTTCGGGTCAATCGAGGAGACTCGCCGGAGCTTGAGCTGTCGATAAGCGGAATAATACAGAGCCGAGAGATGGAGCGCCGTGAATGATTATGGCCGATAGTCACCGGAGGGCAACGGATAGAGGCAGAGGCAGAATGACATCAGGATACTCGCAGCAGTTTGTCAGCAGCAAAGCGTCAGACATTCAGGAGCTCGCGTCCAAGCGCGTGGACATCCAAAAGAAGCGCTTCTACCTGGACGTGAAGCAGAGCACCCGCGGCCGCTTCCTGAAGATCGCCGAGGTGTGGATCGGCCGTGGGAGACACGACAACATCCGCAAGAGCAAACTTACGCTCTCCATGTCCATGGCACCCGATCTGCGCTACTGCCTGGGAGACTTCATCGATTATTACGCGCACATCGGGCTCCGAGGATGCCAGGCGGCGGAACGCCGGCCGGAGGAGCAGAGCAACGGCCAGGGCCGCGCGCCGGACCCTCGCCGGAGAGCTGAGCAGGCGGCGTCACCCAACGGCTCCGGTGCGTCCGAAGAGCAGACGCACCGGGTGCTGAAGAGCGAGTTCATCGAGCGGGACAACAGGAAGTACTACCTGGACCTGAAGGAGAACCAGCGCGGACGGTTTCTGCGCATCAGGCAGACCGTCACCCGAGGACACGGGAGCATGGGCTACTACGGCCAGGGCATCGAGCAGACCATCGTGCTGCCCGCGCAAGGGCTcatcgagttccgagacgcgctGTCTCAGCTGATCGACGACTACGGCGACGACGAGCCCGAGCGGGCCTGCGCGCGGAACCACGATGAGTCTCCAGAGCTCCCCGAGGCGGCGTCGTTCCGCGTCGACAACAAACGCTTTTACTTCGACGTGGGCTCAAACCGGTTCGGCGTGTTCCTGAAGATCAGCGAGGTCCGGCAGCCCTACAGGAACACCATCACCGTTCCTCTGAAAGCCTGGGCGCGATTCGGCGAGAACTTCATGAGGTACGAAGAGGAGATGCGACACATCTTCAGCTGCCATAAAGAGAAGAGGACAGACACGGAGGAGCAGGAGGATTGACGC
>TCONS_00003738
ATGGCCGATAGTCACCGGAGGGCAACGGATAGAGGCAGAGGCAGAATGACATCAGGATACTCGCAGCAGTTTGTCAGCAGCAAAGCGTCAGACATTCAGGAGCTCGCGTCCAAGCGCGTGGACATCCAAAAGAAGCGCTTCTACCTGGACGTGAAGCAGAGCACCCGCGGCCGCTTCCTGAAGATCGCCGAGGTGTGGATCGGCCGTGGGAGACACGACAACATCCGCAAGAGCAAACTTACGCTCTCCATGTCCATGGCACCCGATCTGCGCTACTGCCTGGGAGACTTCATCGATTATTACGCGCACATCGGGCTCCGAGGATGCCAGGCGGCGGAACGCCGGCCGGAGGAGCAGAGCAACGGCCAGGGCCGCGCGCCGGACCCTCGCCGGAGAGCTGAGCAGGCGGCGTCACCCAACGGCTCCGGTGCGTCCGAAGAGCAGACGCACCGGGTGCTGAAGAGCGAGTTCATCGAGCGGGACAACAGGAAGTACTACCTGGACCTGAAGGAGAACCAGCGCGGACGGTTTCTGCGCATCAGGCAGACCGTCACCCGAGGACACGGGAGCATGGGCTACTACGGCCAGGGCATCGAGCAGACCATCGTGCTGCCCGCGCAAGGGCTcatcgagttccgagacgcgctGTCTCAGCTGATCGACGACTACGGCGACGACGAGCCCGAGCGGGCCTGCTCTCCAGAGCTCCCCGAGGCGGCGTCGTTCCGCGTCGACAACAAACGCTTTTACTTCGACGTGGGCTCAAACCGGTTCGGCGTGTTCCTGAAGATCAGCGAGGTCCGGCAGCCCTACAGGAACACCATCACCGTTCCTCTGAAAGCCTGGGCGCGATTCGGCGAGAACTTCATGAGGTACGAAGAGGAGATGCGACACATCTTCAGCTGCCATAAAGAGAAGAGGACAGACACGGAGGAGCAGGAGGATTGA

Function

symbol description
purg Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURG (purine rich element binding protein G).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0032422 purine-rich negative regulatory element binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-070702-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURG (purine rich element binding protein G).

Ensembl:

ensembl_id ENSDARG00000099187

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003737 False 1320 mRNA 0.59 1 7563755 7565074
TCONS_00003738 True 948 mRNA 0.62 2 7564106 7565071

Neighbor

gene id symbol gene type direction distance location
XLOC_001888 fut10 coding upstream 298989 7255695 ~ 7264766 (+)
XLOC_001887 psd3l coding upstream 329800 7029664 ~ 7233955 (+)
XLOC_001886 slc38a9 coding upstream 619348 6907715 ~ 6944407 (+)
XLOC_001885 ddx4 coding upstream 658181 6884123 ~ 6905574 (+)
XLOC_001884 NA coding upstream 807989 6754270 ~ 6755766 (+)
XLOC_001890 BX537303.1 coding downstream 8242 7573316 ~ 7578051 (+)
XLOC_001891 tex15 coding downstream 20854 7585928 ~ 7588878 (+)
XLOC_001892 ppp2cb coding downstream 28111 7593185 ~ 7617748 (+)
XLOC_001893 hint1 coding downstream 71737 7636811 ~ 7640797 (+)
XLOC_001894 fam136a coding downstream 106186 7671260 ~ 7672949 (+)
XLOC_001871 NA non-coding upstream 1446819 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1682522 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1770229 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1975525 5587960 ~ 5588230 (+)
XLOC_001897 NA non-coding downstream 243637 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 278332 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 305535 7870609 ~ 7901888 (+)
XLOC_001900 NA non-coding downstream 413443 7978517 ~ 7984582 (+)

Expression


Co-expression Network