XLOC_001891 (tex15)


Basic Information

Item Value
gene id XLOC_001891
gene name tex15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7585928 ~ 7588878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003740
CTCTAAGGTTCTTGTTTGGCAAGACATGAATCATGGTGCACCAAGTGAGGCTCTTGAGACATATAAGAATTCAAACCCACAGATCATTTTTGGGGTGACAGAGTCAGGTGTTACTCTTGTAAACAAAGTGGAGCACCTTCCTCCATCCACAGATAGACAGACTCCACAAAAGATTGAAGTTGCTAGAAAACGCAAATGTTTACAGTTATGGATGTCCTCTGAACCCAGTGTGTCAAAGAGCATAAAGTCTAGCAAGGAGCTTGCTTACAAAATGGCTAAAAGGAGGGTGACTCATCCACCTGTAACACATTGTGACGTGAATGATAAAGGCCCCCTTTTCCAAACAACTCCAGCCACCCATCTTGAGGAGCTGAGCCCTTACTACCCACTCCCTCGCAGAATGGATCCACAGTGGGGAATGGTTGGACGTGATGCTGTAGACTGGAAGACACCTAACACAGTCCCCCCCTCGCCTTCAACGTCTCATGCTCACTCCGAAATACACTCTCGTCTTCTGTCTAAAAGACGAAGGGCTGTTTCACATTCTTCAGACAGGAGATCTTTAGCAGACATACAAAGACCTCAATGGCCTTCGGTCTCAGATTCCCAAGCAACTTTACGAGGAGATTCTTGTGCTTCACGTTCAGCATTTGAGAGCGTTAAATATCAACAAAATAGCACTGCAGCGCATTGTTCTATGCTCTCACAACAGCAAGTAAACCAGTTCAGTTTAGCCATGACACAACCTTATAATTTACCAAACTGTAATGTAAATCA

Function

symbol description
tex15 Predicted to act upstream of or within homologous chromosome pairing at meiosis; male meiotic nuclear division; and regulation of double-strand break repair via homologous recombination.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003740 True 777 mRNA 0.45 3 7585928 7588878

Neighbor

gene id symbol gene type direction distance location
XLOC_001890 BX537303.1 coding upstream 7877 7573316 ~ 7578051 (+)
XLOC_001889 purg coding upstream 20854 7563755 ~ 7565074 (+)
XLOC_001888 fut10 coding upstream 321162 7255695 ~ 7264766 (+)
XLOC_001887 psd3l coding upstream 351973 7029664 ~ 7233955 (+)
XLOC_001886 slc38a9 coding upstream 641521 6907715 ~ 6944407 (+)
XLOC_001892 ppp2cb coding downstream 4307 7593185 ~ 7617748 (+)
XLOC_001893 hint1 coding downstream 47933 7636811 ~ 7640797 (+)
XLOC_001894 fam136a coding downstream 82382 7671260 ~ 7672949 (+)
XLOC_001895 ggcx coding downstream 114373 7703251 ~ 7723457 (+)
XLOC_001896 sftpba coding downstream 209209 7798087 ~ 7805010 (+)
XLOC_001884 NA non-coding upstream 830162 6754270 ~ 6755766 (+)
XLOC_001871 NA non-coding upstream 1468992 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1704695 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1792402 5788407 ~ 5793526 (+)
XLOC_001897 NA non-coding downstream 219833 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 254528 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 281731 7870609 ~ 7901888 (+)
XLOC_001900 NA non-coding downstream 389639 7978517 ~ 7984582 (+)
XLOC_001901 NA non-coding downstream 399147 7988025 ~ 7992459 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_00862451_00870277 NA coding CI01000304 null 862153 ~ 872429 (-)