XLOC_018953 (nlrc3l1)


Basic Information

Item Value
gene id XLOC_018953
gene name nlrc3l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25533531 ~ 25543402 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037637
TCTGTCACTGCTGGAAACATCTTAAAAACTCGTGACGCCAAAAGTAAATCAGCACGTTACAGTGCTCTGCTGGTAATCATCATTTTTGTGACAAACGAAGATTAAATAGCAAAACATGGACGACGACGTGGACATGGCGTCAGACAACAGTCTGCCATTAGGAATCGGGGCTTCCGCATTCGGAAGTGAAAATGGGGATGAAGAGGACGTCCTTCCTGAGAGGACACTTCCATTCTCTCTGGGATACTCCGATCCTGTGGGACAATATGTGGAGAGAGCAGAGTCGCCTGCATCCAGTTACAACTCCATGGAAAGTAACAGCTGGTCAGAAACAAGAGAAGAGCATGGACCGACTCGCACACAGGTTCAGCTATACAGACGGGACTCATCTGCTTCTAGCAGTGATTCCTTTATTAGTGATGATGAAGACTTGAATATGGAGGATGAAGCTGGAGAAAGTGTACGGAAAAAGAGCAAGAGGGAAGCAACTGTGAAACAACAAAATCAACCTCCTCCTGTTAAACCAGAGTTGGAAGTGGATCCGAATGAGAAGAGGCATCCTGCAATGACTGTGGCATTCGCTTTCAATGCCCTCACAATCTGCCTAAAGAAACTGGCACAGGACGAATTAAAGGTCTTCAAGAAACTCCTGTGGGACCGATATCCAGAACGCTTCCGTGATCCCTTGGACGGACTTGATATTGTGGATCTAGTGGATAAGATGCTGGAGCTCTGTGATATTGAGGTGTCTATGAAGATCACGCTGGCAATCCTTCATTTTTTGAACTTAAAGAAGCTGTCTGAATATCTGCAAGGGCTTTGCAAAAGAAACGAAGTGCGCTACGAGTTGAAATTGTCACTTAAGAGGAAGTATGAGATGGTATACGAAGGGTTAAGTCAACAAGGACAACCAGTGCCCTTTGAGTCGGTCTATACAGATCTTTACATCACAGATGGCATCAATGCATCAGTGAACAGCGAGCACGAGTTCAGATCTAAGATAGAACAGCTCGAAGAGACGGGCAAAGTCAACCGAACACCAATAGCAAGAGAGGAAATCTTTCCCCTTGGTAATGAGAGGTCAAGGCATGTCAGGTCATTGTTAACCAGAGGAGTCCCAGGATGTGGTAAATCGTTTGCTGTGCAGCGCTTCATCCTCGACTGGGTGGATGGGAAAGTCAACGAAAATATTTACTTTGTCCTTCCTCTGCCATTCAAGGAGCTGAATCAGATGCTAGAAGGAGAGTACACCCTCCTTACTCTAGTCAGCACATTTTATCCAGAGATGAAGGAAATAGACACTCTAGATTTCGAAGGCTGTCCTGTACTATTCATATGTGACGGACTGGATGACACTCAAATCCTCTTTAATTTCCGGAGAACAGTATATTGCTGTGATCTGACCAAGCCTGTGAATGTGCAAGTGTTGATGACCAATCTCATCAGAGGGAACCTGCTGTATAGCGCCAGCGTATGGGTCACTTCTAGAGCAGGATCTCTAGATGTGATCCCGCCAGAACACGTCCACCAGCTCATGGAGGTTCGTGGCTTCAATAATGATCAGAAAGAGGCCTATTTTAGAAAGACCATCCCAGACGGAGAGCTTGCCGAGAAGGTGATTGCTCACATCAAGTCTTCAAAGACGCTGTTTATTATGTGCTACTCGCCGCTCTTCTGCTGGGTGGCATCTAAAGTGCTTCAGCGTCAGTTGGTCAGATCTTCAGCAGAGCTGCCCAAAACACTGACCGGTCTGTACACCACCATGCTGCATCTTCACACTAAAATGTGTGATCAGAAACTGCTGAACAACCCCAATAAACACACCAGTGGTCTGACTTCTGAGATTTTGCTCCTTAAGCTTGCAAAGCTGGCGTACGGGATGCTTGAGAAGAACGTGTTTCAGATTGAGAAAGAGCACTGGGAAGAGATCGAGTTGCCGGAGTCGTACCCTGCCATCGTCTGCACCGGCCTCTGCTCTGAGTATTACAGAGAGAAGTACATGATTTACACAGAGAAGGTGAGCTGCTTCTCTCATCCGACCATTCAGGAGTACCTTGCGGCTCTTCATGTTTTCTACTGCTACAGGAAACATGGAAAGAACGTCCTTGATCCGAGCAAGCTGAAGGTCTTAAAGGTTTCCTTGACAGACTTGCTTAAGAGCGCAGTTGACAAAGTTTTAAACACCAAGAATAGCAACTATGATATCTTTCTCCGCTTCTTGCTGGGTTTGTCTGTAGAGGCCAACCAGGAGGTGCTCAAGAGCCTCCTGCAGATCTCCAGCAGCTCTAGCCAGCACGCACGCGATGAGACCACTCGCTTCATCTTGAAGAAAATCAAAGAAGGACACTACGCGGAGAAACATGAAACCCTTATGCGCTGCATTGATGAACTTAACCCATAACCGCAGCACTGAAGTGTTGAGTAAAAAGAGTCCCATGATGAACTTAAACCAAATGAACCTAAAGCACGGCTCACACAGTCTGATTTTTAATAATTCTACACGATTGCCGCATGACAGACTGCACAAAAATGACTCCGATGTTACACTCTAAGATCTCAGTTCAGACTGAACAACAATGCAGTAATTTTGCATACAGCATGCctcaataattaaattaaaaaaagcactgGTTTGAAGGTGTAACGTTCATTCTGCACTCCTCTTGGTTGTTGCTTTGATGCTTGTTGTAACTAAAGTCACACTACGTGAACGTATCTCAAATCTTCTAAAAATGCTAGAACCTAAGGGAAAATTTGATCGCATCTGTTAAGCGGCTGTCAGTAaacatgtcaaaccaatgatCAAAGTCCACAGATTTGAGTCTAGGATTACAGGAATCTTTTAGTATTTCCTAAATTTTACTAAGATAACCAAATCGTGGTTGAaatcacagtgtgagcagggcttaagTTGTTATACCAAAGGTGTGTGGTGGTAGAAAAAATGAGCTATGAATGTTTTCAACCATCCAAAAGTTCATCTCCCAAAAGCgttagggcttttcacactgtACATAAATCGCTGTGAACACTGCTTTTAATCAAGGGTGAAGAAGTGTTTTACACTTATCATTTAGAGGATTACGAAACCTTTGTGTGGTGTAGGGTTGCTTTTGTTATTGCTAAAGCTATAATATGATTAGATGCTAAAGGGCCAACAGTTTACAGTCATGGTTCTTTTTGGTCTGGGACCATAGATTTGTTCTAAACTTCACCACCTCACCAGAAATTATGTGAACTAAAGAAAGCACTGTTTCTTTTTTACCTTTATAGTCTGTTAACTCCAttctacaaaaaataaagtacagTTATAATTTATCAGCTTTAATATATCAACCAAATTATTTATCAGACTGTTTatgttaacattaaaaataaccaTTTAGCTGGGTTTAACATCATCTAGAATGAACAATTGAAGTCTGAAAAGACTTGCCAATGACTTCATAATGCTTCATTAAAGCCCAGGGGCCTCATTTATAAAACGTTGCCTTGAAACTATTCTTTATGTAATATATAGCCACTTCACAATAGTGCTTATAAGTGATTCAGAGAAATGAATGCATGCACAAAATACACATGCTTCAGATGTGAAATTTTTGCA
>TCONS_00037638
ATGGACGACGACGTGGACATGGCGTCAGACAACAGTCTGCCATTAGGAATCGGGGCTTCCGCATTCGGAAGTGAAAATGGGGATGAAGAGGACGTCCTTCCTGAGAGGACACTTCCATTCTCTCTGGGATACTCCGATCCTGTGGGACAATATGTGGAGAGAGCAGAGTCGCCTGCATCCAGTTACAACTCCATGGAAAGTAACAGCTGGTCAGAAACAAGAGAAGAGGTTCAGCTATACAGACGGGACTCATCTGCTTCTAGCAGTGATTCCTTTATTAGTGATGATGAAGACTTGAATATGGAGGATGAAGCTGGAGAAAGTGTACGGAAAAAGAGCAAGAGGGAAGCAACTGTGAAACAACAAAATCAACCTCCTCCTGTTAAACCAGAGTTGGAAGTGGATCCGAATGAGAAGAGGCATCCTGCAATGACTGTGGCATTCGCTTTCAATGCCCTCACAATCTGCCTAAAGAAACTGGCACAGGACGAATTAAAGGTCTTCAAGAAACTCCTGTGGGACCGATATCCAGAACGCTTCCGTGATCCCTTGGACGGACTTGATATTGTGGATCTAGTGGATAAGATGCTGGAGCTCTGTGATATTGAGGTGTCTATGAAGATCACGCTGGCAATCCTTCATTTTTTGAACTTAAAGAAGCTGTCTGAATATCTGCAAGGGCTTTGCAAAAGAAACGAAGTGCGCTACGAGTTGAAATTGTCACTTAAGAGGAAGTATGAGATGGTATACGAAGGGTTAAGTCAACAAGGACAACCAGTGCCCTTTGAGTCGGTCTATACAGATCTTTACATCACAGATGGCATCAATGCATCAGTGAACAGCGAGCACGAGTTCAGATCTAAGATAGAACAGCTCGAAGAGACGGGCAAAGTCAACCGAACACCAATAGCAAGAGAGGAAATCTTTCCCCTTGGTAATGAGAGGTCAAGGCATGTCAGGTCATTGTTAACCAGAGGAGTCCCAGGATGTGGTAAATCGTTTGCTGTGCAGCGCTTCATCCTCGACTGGGTGGATGGGAAAGTCAACGAAAATATTTACTTTGTCCTTCCTCTGCCATTCAAGGAGCTGAATCAGATGCTAGAAGGAGAGTACACCCTCCTTACTCTAGTCAGCACATTTTATCCAGAGATGAAGGAAATAGACACTCTAGATTTCGAAGGCTGTCCTGTACTATTCATATGTGACGGACTGGATGACACTCAAATCCTCTTTAATTTCCGGAGAACAGTATATTGCTGTGATCTGACCAAGCCTGTGAATGTGCAAGTGTTGATGACCAATCTCATCAGAGGGAACCTGCTGTATAGCGCCAGCGTATGGGTCACTTCTAGAGCAGGATCTCTAGATGTGATCCCGCCAGAACACGTCCACCAGCTCATGGAGGTTCGTGGCTTCAATAATGATCAGAAAGAGGCCTATTTTAGAAAGACCATCCCAGACGGAGAGCTTGCCGAGAAGGTGATTGCTCACATCAAGTCTTCAAAGACGCTGTTTATTATGTGCTACTCGCCGCTCTTCTGCTGGGTGGCATCTAAAGTGCTTCAGCGTCAGTTGGTCAGATCTTCAGCAGAGCTGCCCAAAACACTGACCGGTCTGTACACCACCATGCTGCATCTTCACACTAAAATGTGTGATCAGAAACTGCTGAACAACCCCAATAAACACACCAGTGGTCTGACTTCTGAGATTTTGCTCCTTAAGCTTGCAAAGCTGGCGTACGGGATGCTTGAGAAGAACGTGTTTCAGATTGAGAAAGAGCACTGGGAAGAGATCGAGTTGCCGGAGTCGTACCCTGCCATCGTCTGCACCGGCCTCTGCTCTGAGTATTACAGAGAGAAGTACATGATTTACACAGAGAAGGTGAGCTGCTTCTCTCATCCGACCATTCAGGAGTACCTTGCGGCTCTTCATGTTTTCTACTGCTACAGGAAACATGGAAAGAACGTCCTTGATCCGAGCAAGCTGAAGGTCTTAAAGGTTTCCTTGACAGACTTGCTTAAGAGCGCAGTTGACAAAGTTTTAAACACCAAGAATAGCAACTATGATATCTTTCTCCGCTTCTTGCTGGGTTTGTCTGTAGAGGCCAACCAGGAGGTGCTCAAGAGCCTCCTGCAGATCTCCAGCAGCTCTAGCCAGCACGCACGCGATGAGACCACTCGCTTCATCTTGAAGAAAATCAAAGAAGGACACTACGCGGAGAAACATGAAACCCTTATGCGCTGCATTGATGAACTTAACCCATAA

Function

symbol description
nlrc3l1 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-248 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000086553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037637 False 3604 mRNA 0.43 7 25533531 25543402
TCONS_00037638 True 2265 mRNA 0.47 6 25533908 25542199

Neighbor

gene id symbol gene type direction distance location
XLOC_018952 NA coding upstream 97287 25434689 ~ 25436244 (+)
XLOC_018951 BX510938.3 coding upstream 156252 25376955 ~ 25377279 (+)
XLOC_018950 or132-5 coding upstream 156793 25375172 ~ 25376738 (+)
XLOC_018949 BX510938.4 coding upstream 167397 25365879 ~ 25366134 (+)
XLOC_018948 or132-3 coding upstream 167661 25364338 ~ 25365870 (+)
XLOC_018954 NA coding downstream 42324 25585726 ~ 25586281 (+)
XLOC_018955 ovol1b coding downstream 81624 25625026 ~ 25631382 (+)
XLOC_018956 tmem151a coding downstream 100478 25643880 ~ 25645676 (+)
XLOC_018957 NA coding downstream 116835 25660237 ~ 25664660 (+)
XLOC_018958 sumf2 coding downstream 126532 25669934 ~ 25676396 (+)
XLOC_018946 BX510938.5 non-coding upstream 186528 25346781 ~ 25347003 (+)
XLOC_018945 BX510938.2 non-coding upstream 187143 25346085 ~ 25346388 (+)
XLOC_018967 BX890629.2 non-coding downstream 636497 26179899 ~ 26180015 (+)
XLOC_018969 NA non-coding downstream 939115 26482517 ~ 26489764 (+)
XLOC_018970 NA non-coding downstream 946905 26490307 ~ 26501378 (+)

Expression


Co-expression Network