XLOC_001897


Basic Information

Item Value
gene id XLOC_001897
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7808711 ~ 7809243 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005678
TAAAGGACCCAGTGTCATTTCATGTTTAAACTATGTGACCTGAGCTTTTCAAGACCAACCTTACTGAAGACCTTGGCTGATGTGTGCTGACGTTTCTTCTACAAGATTTTTGGGGTCAGTGATGAAATATGGCATAAGACATTTACAACCATTTTAAATGTTCTTATGAACTTTCCCTATTGATAAAGCAAAAATATCATAAACATTTTCAATGAAGTCAAGTGTTTCTACAGCAGCAAAGCTGCACAGACAGATTTCAGGACACTGAAGACTACAATGCAAAAATTCAGTTATCAATCATAACTAAACTCAAGCATAATATTTGAATATAGcattgtaattaattattttaaaaaagttcaaAATCAATAATTTGCTATATTATTGCACCAAAATGTGAAATACCATAAAACAACAGTGTTAAGGGTCAGAAtttttattcagttcacttatatAAGGGACAGAACCATCATGGAGCATTGAAAGGAAGGGAATTCAGGAATTAGCTGTGGATTCACAAGTGGATTCACGAG

Function

GO:

id name namespace
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005678 True 533 lncRNA 0.33 1 7808711 7809243

Neighbor

gene id symbol gene type direction distance location
XLOC_001896 sftpba coding upstream 3701 7798087 ~ 7805010 (+)
XLOC_001895 ggcx coding upstream 85254 7703251 ~ 7723457 (+)
XLOC_001894 fam136a coding upstream 135762 7671260 ~ 7672949 (+)
XLOC_001893 hint1 coding upstream 167914 7636811 ~ 7640797 (+)
XLOC_001892 ppp2cb coding upstream 190963 7593185 ~ 7617748 (+)
XLOC_001898 NA coding downstream 34163 7843406 ~ 7849873 (+)
XLOC_001899 NA coding downstream 61366 7870609 ~ 7901888 (+)
XLOC_001900 NA coding downstream 169274 7978517 ~ 7984582 (+)
XLOC_001901 NA coding downstream 178782 7988025 ~ 7992459 (+)
XLOC_001902 NA coding downstream 226941 8036184 ~ 8037889 (+)
XLOC_001890 BX537303.1 non-coding upstream 230660 7573316 ~ 7578051 (+)
XLOC_001884 NA non-coding upstream 1052945 6754270 ~ 6755766 (+)
XLOC_001871 NA non-coding upstream 1691775 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1927478 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 2015185 5788407 ~ 5793526 (+)

Expression


Co-expression Network