XLOC_001898


Basic Information

Item Value
gene id XLOC_001898
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7843406 ~ 7849873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005824
CTGCTCGCAGAATATCCGGTGTCTTTCCCTCCCTGTTTAAGACTCACGTGCAAAGAGAAAAGAGCAGACACTGGCTTGTGATCACTAATAGTGAAGCCCATGTGACTGCAGTAGAAGTGCTGAGAGACTCTGGTGGCTCCGCCAAGCCATGAGGTCAAACCACGCTGCAGAGCTGAATTATGGGATGGGACGGGGGAGCCTGTCCTACGCAGACGCCACAAGATCCGATCTGTCCACGCAGGCTTCCTCTTTTTAGCACTGGAAAATGAAGcggaCTCCAGTTCGTGACGATCCAACACCCGACTTCTCACTATCcttcaccttctccccggagcaccagagcaccacTACTAAGAAGAGCACCGTATTTCACCCCtgttcactttgtaaataaagcaccctccggggac

Function

GO:

id name namespace
GO:0033273 response to vitamin biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005824 True 410 lncRNA 0.53 2 7843406 7849873

Neighbor

gene id symbol gene type direction distance location
XLOC_001897 NA coding upstream 34163 7808711 ~ 7809243 (+)
XLOC_001896 sftpba coding upstream 38396 7798087 ~ 7805010 (+)
XLOC_001895 ggcx coding upstream 119949 7703251 ~ 7723457 (+)
XLOC_001894 fam136a coding upstream 170457 7671260 ~ 7672949 (+)
XLOC_001893 hint1 coding upstream 202609 7636811 ~ 7640797 (+)
XLOC_001899 NA coding downstream 20736 7870609 ~ 7901888 (+)
XLOC_001900 NA coding downstream 128644 7978517 ~ 7984582 (+)
XLOC_001901 NA coding downstream 138152 7988025 ~ 7992459 (+)
XLOC_001902 NA coding downstream 186311 8036184 ~ 8037889 (+)
XLOC_001903 sub1a coding downstream 241271 8091144 ~ 8098099 (+)
XLOC_001890 BX537303.1 non-coding upstream 265355 7573316 ~ 7578051 (+)
XLOC_001884 NA non-coding upstream 1087640 6754270 ~ 6755766 (+)
XLOC_001871 NA non-coding upstream 1726470 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1962173 5880700 ~ 5881233 (+)
XLOC_001906 CU682363.1 non-coding downstream 493315 8343188 ~ 8343305 (+)

Expression


Co-expression Network