XLOC_001901


Basic Information

Item Value
gene id XLOC_001901
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7988025 ~ 7992459 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005679
TGCCAAGCAACTGACAGACACGTGTAAATATGTACTAAAATATAATTAGCTCATTCTTAAAGCAATTATTGAAAATGTGTGTGGTTTTGTTTTATGCAAGCATTACCGAGCAAAATGTAAAATGCCGCATTTTTACGTCCCCTCCCCCATTTCCACACGCAGTAAGACCGAACCGGCTCGAACCACACCGGCATAATACACACATTTAACTGATTATCTCGTTTTGTGGAACACAACTTAATCTGCGTTAACTGTAACCGTCgacaaaaataacactcattaCTAATCTAAAAATCTTCAATTCACAAGGTACAACAGGGCACAAAAGATTTTACATTGATCTTACCTGCAGCAGACGCCATTTCGTGTGCCTTCTGAAGCGGAAAGTGCGCATGCGTGGATGACGTTCATCAGCCGGTACCTACTCATCGAGCGGGGATGGATATTTATTACAAACGTGAAGACGCAGAGCATGGAGGAAAGCAGACAAACCCTCCATCACCAGCAGTATGGAGATGGTGAGCACAGCAAACACACTGAACACTGGCACAAGGAAAATAACGCCCAGTCTGGAGCTGATCCTCAAACCGAGACGCATCACCATCGCCCACAGCACCTCCGACAGCTCTGAAACAGAGGTAACACATACAATGAATtcacaaatactacagtaaaaaaagATGTGTGGTACAGTGATTCCATGTGTTTTTCGTATGTATAATCAAACACTCACGAGCGTGGGCGAGACTCAGGGCCCAGAGCCGCAAGTAGGAGGCTGTGTTGGAAATACAGCCCAGACTGTACTCTATGGTGTGAATGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005679 True 821 lncRNA 0.44 2 7988025 7992459

Neighbor

gene id symbol gene type direction distance location
XLOC_001900 NA coding upstream 3443 7978517 ~ 7984582 (+)
XLOC_001899 NA coding upstream 86137 7870609 ~ 7901888 (+)
XLOC_001898 NA coding upstream 138152 7843406 ~ 7849873 (+)
XLOC_001897 NA coding upstream 178782 7808711 ~ 7809243 (+)
XLOC_001896 sftpba coding upstream 183015 7798087 ~ 7805010 (+)
XLOC_001902 NA coding downstream 43725 8036184 ~ 8037889 (+)
XLOC_001903 sub1a coding downstream 98685 8091144 ~ 8098099 (+)
XLOC_001904 pstpip2 coding downstream 109270 8101729 ~ 8142213 (+)
XLOC_001905 mtrex coding downstream 205368 8197827 ~ 8266094 (+)
XLOC_001906 CU682363.1 coding downstream 350729 8343188 ~ 8343305 (+)
XLOC_001890 BX537303.1 non-coding upstream 409974 7573316 ~ 7578051 (+)
XLOC_001913 NA non-coding downstream 654500 8646959 ~ 8650855 (+)
XLOC_001917 NA non-coding downstream 717026 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 780977 8773436 ~ 8773659 (+)

Expression


Co-expression Network