XLOC_019017


Basic Information

Item Value
gene id XLOC_019017
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30022933 ~ 30027629 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039425
CATCAGAAAACATGTACACAATATCTTCAACTGTTACTTTTTTTCAATGGTTTTACAGCATTCTCTGACCTGCAAACAGATAGAAATAATAAAAGGTAAAGTAGGATGCTGAAATGAAAGCCAACCACCAAAATAAATAGCGTTTTTACTCCTTTACACAAACCtccatcggtcagtcagtcagtcagtgtggTCTAccaagcattgttttttttttgtttttttgatttcCTCAAGTCATCGACCTCTACCTGCTAAATCATAATTGGAAAGACCAAGATATCTTACAGTAATATCCCTTCTCAGATGTGTAAATATAACCGGACAGTATACAATGCTAATCAAAATTTATGGTTTGCTTCTTGATATGCCTAAATATGAATCCTCATTACATACGCACTCCTAGATCCTTGCAAAAATGAAGCCGAGGCGGCCGGTGGGTTGGCTGAGCAACAGGTAAATCTTTGCCATAATCAGACATACAGTCGAAGACACAAACATGACAAGGGGTAGGAGGGAGCAGAACAAGTGGAGGAAAAGAACAAGCAAGTAGATTTGGGACGAATGAGCTTGGGAAGCAGATGTTGAAGCTGCGAGGGGTGTGGGGAAGAGGACGCACAGATAGGCTGGCAGGTTTCTCCGTGTCTGAGGTGGTACTGTCTGCATTTACAGAGTCGCTGTGCTCTCCTCACAGTGGCACTTGAGGTGACTTCGGCTTACAGGCACCTCCCCCCTTAACAGCAGCTCGACTGGCTGCGAAACCACGGCTGGCCAACAGCCACGCCCAGATCAACAGCCGTCTGCTCAGATCAACGCACTGGGATTAGTTGTCTCTGAACGTCTGAGAAAGATCAGCACCAATTAAGTCCCTTTTTAAACTACCTGAGCGAGGCACTCTACCCAAAAGGGTCAACTTTTACAGTTACAGAACTTCCATAATGAAAGAAATCAATTCGAGGATGACCCAAGTGAAATCCAAGACTTTAGTTCACATAATCTTTGAGACTTGAAGGTCTAAAAACACTGTAGTGATAGAGTATGCAGCAGGAACGGTCTGAATCTGAACCTATAATACTTTCTCTGATCTGAAAGGAAGCACTAACTGTGCTAGGTTAGAGATCCAAAAAAAGCATCAGTCTATTTGTTAGGGCCACCGATTACAGTAATAAATTAAGAATGGATTCATCCAGACATTCTTAACTCTTCTGGCAAAAGCTGTTCAGCATCAGTAATTATCCCACTCTGAGAGCATCTGCTTTTCATGTTTACAGAGACCTTCAACAGCAAACACTGACAAGAAGAAACTTACATATTTGTGGCTGCTCAATAACCCATAAAACCTTTTTTTCCAAGACATCTGCTTTCAGTATAATAAATGTATGATGATGATGTCATGATTAAAAGAACTTTTAGCAAGGGGCGAACTATGATATTTGACATAAAAGCCATTTCCTTTAAAATTATTCAATTCATTCGCCTTCTCTTGCCTtctcaacaaaaataaattagtcCTGGTTGCCTGGCAGACATTTTTCTGGGTTTCACTCTGGAAGCTGACTGGGTACAGCAAAGTTTGAGAGGTGTCAGAGGGGGTACAGGGCCAACTCGGTTGCCTGTTGTGCCTACCTTAGCAAGGCATTACCACCTCACGTCTCAAACTGAGTTAACAAGGCTCGGACCTCAGGAGTGAGCTGCTTGGCAGCCTTTGCAGCCTCGGTGATGGCTTTACGATACAAGCCCTTTCTCTTCTTGTCAAAGCGAGACTGGAAGTTTTCTAGAAATGGGGCAAGTTGAGTAATGGCTAGGAAGGAAGTGGTGGGTGACCCAAACCAAGAGACTCGGGCCTCCTGCCTGACTAAAAGCCCATTATCTTTGCGACTCACTGTGATGGCTAGGATGCGGGCGGGCCACCAGGGGAAGCCAAGGATTTTGGCCCAAACAATATCCCCTACACATATTGTCCTGCCATCTAGGGCAACACATTTTGTAACGTTTTTTGAAAAAACAGCAGCTTTGAGAGATTTACTGCGCTTTTTGTCATCCTGTGGAGCAGAGGGAGAGGCAGAGGCAAAAGCGGAGGATGTGCCAGGGGCAGGGGCCGATCGCAAATCACCAGGAGGGGGGAAGTCGAATGTTTCAGTCGAGCTACACTCAGAGTTTGATGACTTTAAGTCATCTGCACTATCAATGCTGCACATGGAGGTACTAGAGGAGTCAGGCTGGCTGGGGTTAATGGTCATGTAGACCACTAGGTTACCGGCCTTGCTCCCACGTGTCTCCCGCTTTTCCTCCCGCCCCTCCTGTTCCTCTGGCTCAGCCTGGGGTTCCCTGTATTCCGTGGCTGGGGGGGGATCGGGTTGGGCCTGGCTGAGCAGAGACTCGATTGCTTTGCCTGGCCTCTGGGGCTCTACAGCTGTGGCGACTTGGCTTGcagagcaggaggaggaggaggagcgcGTGGAGGTGCAGCGGGGCAAAGCTGGTTTAGGCAACGGTAAACGGCCCCCTCCCGGCACTTTCTCCAAGCAAGGCGGCTTACATGTGGAAGAATCGTTCTCTTCATTACGGTACCTTTGGGGCTTGATGCGCATCCTAGGGGGCAGAGGGTTGGAACCTGGACCTCCTCCACTGATCTGCTGCAGTCGCCGAGTAAAGTGGACCTTCTGGTGGGCTTCCTGAAAAGCAGCAGCCCTGGTTATGGCCTTAGCGTTCCCACTACTTCCCGTGTCTGTCTCTTTCTGTCTTCTCTGAGCTTTGGCCATCTTCAGCACTTCTCGCGCTTTAGAGTGGTCAACGTTTTTGCTCTGAAGCACTTTTTTGGCATTGAGCTGCACTCGAGAGTTGGCAGAAGATGTTGTAGTGGACACCCCCTTTACCATTTTATTCCCTGCAGCTGCACCTTTGACCTGACTATGGGCCAGAGTAGAGCCGGTGGATGATGACACACGTACAGCCGAACCTTGCCGTTTGGGCCCATCAGAACCACGGCCCTTTTCTTCAGAGCGTGGATCACTACGAGGTCGCTTACTAGCAGCTGCCGTTGTGTTGTCGTTACGCCGTCTTTTGGCATCATCACTCCGACAGTCTGAAATGGGCCCTCTGCGTGTCTCACGTTTGTCCCCTTGCACCACAGCCCCTTTACATTTATCACACAAAACTTGTCTTGGTCGGAGCTTGATGGCATTCATTATAGAAGTGGGCTCCTCTCGATACAGCCTACGCTTGGGCCGTTTAATTTTGCGCGGTAGAGGCTGAGGTAACGACTGGTTGTAGGTGTCCCTGATGAACAGTGGAGGTGGATAAGGGGCTCCCTCCTGAAACAAAGGAGGTGGTTTTGAGGTCCATGGGTTAGGTTGAGGGTTAGGACAGGGTTGGGGTGCTGAAGGAGTCTCAGCGGAGTCCTTTAGAGGGGCATCCGAAGCATCCACAGGGTCCTTAATTGGGGCATTACTAGATCCTTGAGCATCACCTTTATCTGTCTCTGACTGGAATGCCTCCATCTTTAGCTGCATAGATTCTGGCTTGTCCTTATACTCTCTTTTGGGGAACATGGTTATAGGAATCCCATAAGGTCCGAACCTGagatacagagaaaaaaaaaagacaaaaacacttaGGTTACCCTGAACAACAAAGTGAGgttaatatttgtacattttcacctaaaatataaattactTGTGAACTGATTGCcgaaaatgcatcttaataccaaACAGGACACCAGATTAGTTTTATGATGCCCTTTTAAATCTTCcaaatttttcaaatattttcaaaatgatttaaCATCTGTCTGTATGTATTGATGTAAAACGTTTCAATGAATGTGATGACACTGTAGTGCAGAAAAAGAGAGTACTCTCTATGATCTGTTAAATGTCAGGAATATACAATGTATTTGACTAGCAACAGTGCTTTAAAAATGAGTGATCTGTCAATCCTGAGATATGACTTTCTTTCATAAACTGGCAATGATCTAACTTGGAAAGATAGAAATGAACATAGACCTTATAGCAGAAAAATAAACCCTAAAAAGAAACTGGACTACATGACAACACTGACTGCATTCCAGTTCAATCAATGGTCAATGTAGTGCTGCTTTTACACCACACAGGAACAGTGGGACCTTCAGCAGAAAATTATTCCACACCCAAGACATTAGTTGCTTTTAAACAATTATAGAGTGaacatccatctacccatcctttACCATGGCCACTGCTTTAAAACAGGACCAATTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039425 True 4245 lncRNA 0.46 2 30022933 30027629

Neighbor

gene id symbol gene type direction distance location
XLOC_019016 ttc1 coding upstream 3307 30007566 ~ 30019626 (+)
XLOC_019015 CU855895.2 coding upstream 36037 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 coding upstream 416483 29606327 ~ 29606450 (+)
XLOC_019013 NA coding upstream 694436 29297157 ~ 29328497 (+)
XLOC_019012 NA coding upstream 705839 29286240 ~ 29317094 (+)
XLOC_019018 fabp6 coding downstream 15425 30043054 ~ 30047353 (+)
XLOC_019019 prob1 coding downstream 57194 30084823 ~ 30090942 (+)
XLOC_019020 NA coding downstream 136270 30163899 ~ 30183554 (+)
XLOC_019021 NA coding downstream 156680 30184309 ~ 30186321 (+)
XLOC_019022 BRD8 coding downstream 167275 30194904 ~ 30236796 (+)
XLOC_019009 CU463029.1 non-coding upstream 916813 29105998 ~ 29106120 (+)
XLOC_019039 NA non-coding downstream 1707560 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 2003007 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 2017795 32045424 ~ 32070143 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_02148291_02155645 PWWP2A coding CI01000006 null 2146863 ~ 2156367 (-)