XLOC_019032 (zgc:110224)


Basic Information

Item Value
gene id XLOC_019032
gene name zgc:110224
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30721733 ~ 30742852 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037753
AAAAACGAATACGTGGTGACGCAATGTGTTGTCACGTTGAATGAGTTGCTTCCACGATGGCTCCCGTCAAAATAAAACACATCGTCTCGTTTACATCACAGGATAGCAGGAACGGTGTGTGTAATCTGTGTGATGGCAGTGACAGCAGCAGGCCATGGTTGTGCAGTGTTCAGGACCGCACTGGAGTCCTCAGAGTGGAGCTGCAGATGGAGAAAGTGTCTGCTATTGGATTCATTGATGTTGGAAACTATGGCTCTGCGTTCATTCAGGTTGATGTAGGCCGCTCATCTTGGTCATCAGATCATCCATTTGTCACTCTGCTGCCCACTGCAACACTCATGAGTCCAGCCGACTCCAAACAGGGCACGGGACGCCAAAATGTGCGCATGTTTAAAAAAGCTGATTTTCTTTCTCGGGCTGCTGAGGAGAGCTGGGACAGACTGCGAGTCACCTGCACTCAGCCTTTCAATAAACACGCACAGTTTGGTCTGTCCTTTCTGCGCATCCGCACCGTAGAAGATGACACTGAAGATTCATCAGAGCAACAAGAAGATACTCCTGAAAATCTGCGTACACCAGAAAAAATGTCATCCGTGATGGAGTGGCTTTCCAGTCCCGCTGTCCAAAACACGTTTTTTGGGCGAATCACAGGGGACGGCTCCTCAGAAGCCCAGAGGAATGCTGGGAGTTTGAGTCGGGCCGAGCGAATGGTCAAAGCTGCTCAGTTAAAGAGACGCTCATTGTCAACTTCTCCATGCAGCACTGCGTCCAGCACAACCCCTCAGAGAGAAGATAACTCCAAAAGCCCACCAGGGGGGTTTAGGACGTCTGGTGAACTGGTTAAGACCCCTCAAGAGCAAAGGAGGAAGCCTAAGGCACGGCAGATCCTTTTAAACAGTGATACTCCATTAAAAAGATCCAGACCCACAGGATCCACACATGATCATCCCACCTCACCAAAATTACCTAGAAGCCAGGCAGAAGCCAGACAGAAGCCAATAGACGCACAGGACTCTCCTGAGACCAGCTGTCCTCTTTGTGGAGAATCTTTCAGTCCAGATTACCTCCCCTTTCATGCCTCCACCTGTCTGGATTCAGATCCATCAGGGCTCGTGGGACTCATGAGCTCTTCTGTTTTTGGCTCAGCTGCAGATGAGCATATGGTTGCATGTCCTCTTTGCTCCATCTCATTCCCCCCAGACCGCATCCAGCAGCACGCCAGCACCTGCGGAGACACCCGAGAGCCCAGCGCTGTCTGGCTGAACTGAGGAGTGCATTGAGGTCTCGGAAACCTTTTCCGCAGTAGTGGAGTGGAAATAGAAATCAGGTATTTTCTAGACCTTACATAAAATGTCTGTGAGTAGACATTTGAATCTGCACGGCTTCCTAAAAGGacttttttattgacatttttagtagTCATTGGTCTTTAATAGGTGTTTGAGTGGCAAACATATTTTGGACTGTAGTTATGTTTGCTATCATATCTTCCATTCAGCCTAtgttcagcattgtttttcaattGGCCATAATGGGTTGTTTGTAACATACAAGTTGCTGTGCAAGTTGTTTTAGCTAtggaaaaacatttattatatgaaGGTCTAATAATGTTTCTTCcctagttttaaataaattgtcatttaggTGGTCAAAATAACCagaatgtttttcattttttttttaaattggcatTGCATAGTCTAAAAATTAATACAAGCATCATTTTGAATATTTTGACTAGACTAGAtattattttaggcaaaaaaagaagaaatgttatcagtggtttatataaaatattatgtttatatataaattatgttttACTCTCTATAATAAATCACAAATCCatagaaatgtaaaaatttaatgtTGTCGTATTTTTTCATAGCTGTatgcaaaatatataatttagaaagtttgtttctgtttagttttgCTGTCATTTTCTCACTTTTTTTCTCACACAAACAAAGGACATTATACCAGAAACGCACATTATCTGTCCTtgaaataaaaacgtaaatacagTGAATGAAAAGTATTTCATGCTAAATAAATTCTGAAATGAa

Function

symbol description
zgc:110224 Predicted to enable damaged DNA binding activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within single strand break repair. Predicted to be active in nucleus.

GO:

id name namespace
GO:0000012 single strand break repair biological_process
GO:0006284 base-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-120 Predicted to enable damaged DNA binding activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within single strand break repair. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000032263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037753 True 2075 mRNA 0.42 9 30721733 30742852

Neighbor

gene id symbol gene type direction distance location
XLOC_019031 clcn5a coding upstream 25138 30662263 ~ 30696595 (+)
XLOC_019030 si:ch211-200p22.4 coding upstream 138647 30563115 ~ 30583086 (+)
XLOC_019029 rab38c coding upstream 161243 30549512 ~ 30560490 (+)
XLOC_019028 slc7a3a coding upstream 184322 30502002 ~ 30537411 (+)
XLOC_019027 snx12 coding upstream 233466 30470809 ~ 30488267 (+)
XLOC_019033 trpc2b coding downstream 3496 30746348 ~ 30765533 (+)
XLOC_019034 slc6a7 coding downstream 51499 30794351 ~ 30830901 (+)
XLOC_019035 rhogb coding downstream 194838 30937690 ~ 30951909 (+)
XLOC_019036 st6gal1 coding downstream 407586 31150438 ~ 31184035 (+)
XLOC_019037 asl coding downstream 510196 31253048 ~ 31277336 (+)
XLOC_019021 NA non-coding upstream 535412 30184309 ~ 30186321 (+)
XLOC_019020 NA non-coding upstream 538179 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 694104 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 734837 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 1115283 29606327 ~ 29606450 (+)
XLOC_019039 NA non-coding downstream 992337 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 non-coding downstream 1287784 32030636 ~ 32030752 (+)
XLOC_019041 NA non-coding downstream 1302572 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1335205 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 1663911 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_01806389_01811758 NA coding CI01000006 null 1805452 ~ 1811758 (-)