XLOC_019035 (rhogb)


Basic Information

Item Value
gene id XLOC_019035
gene name rhogb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 30937690 ~ 30951909 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037756
GCCGTTAAGCCATTAACTTCCTCTCTGAGGGGTGAACACACTCGCGTCCTACAGACTTCAACTACTAACTTCCACAGCCGCCGGATTACTGTCCTCAAGAGCGTCTGATATGTTTGACTGCTGAAGTCAAGGACACATCTTTCAATCATGCAGAGCATCAAGTGTGTGGTGGTGGGAGACGGAGCGGTGGGAAAAACCTGCCTGCTCATCTCCTACACGACCGGCGCCTTCCCCAAAGAGTACATTCCCACCGTCTTCGACAACTACAGCTCCCAGGTCAGCGTGGACAACCGTACCGTCAGCCTCAATCTGTGGGACACCGCGGGTCAGGAGGAGTACGACCGCCTTCGCACGCTGTCCTACCCTCAAACCAACGTCTTCATCATCTGCTTCTCCATCTCCAGCCCTCCGTCCTACGAGAACATCAAGCACAAGTGGCACCCGGAGGTGACACACCACTGTCCTAGCGTGCCCATCCTGCTTGTGGGAACCAAGAGTGATCTCCGCAATGACGCCGACGTGCTGAAGAAGCTGAAGGAGCAGAACCAGGCGCCCATCACGACCCAGCAGGGTCAAGCGCTGGCTCGCCAAATCCACGCCGTCAAGTACCGCGAGTGTTCGGCACTCAGTCAGGACGGCATCAAGGACGTGTTTGCAGACGCAGTGCGTGCCTACCTTAGTCCTCAACCCGTGGCTAACAAGAAGCCCTGTATACTCCTCTGAAAATACAGAGGATAGAGGTATTTTAATTCAATTACGCGCAGAGGAATGCATAGGAATGGTGGGAATGCTATGGAATAGTAGTCAATGATGACCAGGAAGCACAGTCTTGCGCCGGGTTCAGACTACACAATATCTTTATGAttgttatgtttgtttttgatttacACTCCTAAATTCTTGAACCAAAAAAACTCCCGAAGTGAAAACTGTATGCCATCTTTAACAATGTTTGATGTGTGTGATACCATCAAGAAGGCAGAACTAGTGATTAAGCAAAACAAAGCTTGAGGAAACATCAGAATATTAGATCTGGAAACCCTAAGCCATTTTGTCATCATGTTAGAAAGGTCAGTTCAGAAAATCTTCTGTGCTTCTGTAGGTAAATATCAAGTGTGTGACAAACCACACTGGATGACTAAACAATAATTAAACACGCTAGTCTAGTTCTGTCAGGACCAGATCCAAGATCCATCTATTCAAGCATTCTTGTTGTGGTTTACAATTGATCAGAATCAGGCTGATATTGTGCCATCTGAACCCAACGtttatctgttaaacacaagatCAAGTCAAATATTTGGTTTTACACTGTTTTGAAACCCCCATTagcaacaatttttttctttttgcttgaaTTTTCTTTAagtaaatacttatttttaagaAGAGAGAACATTTTTGGGGGCATTCCATTAGACCACTAAACATTTGGATACCATTCTATGGTAtctaaataatatgaaaaacaatATAAAGGAGATGAACCCTTAAATACATTTCAGATGAAAATGGTTTGAGTTCCTCTTGCGTGTTTGGTGACTTACTAATACTATTCCTTTATTGACTTTTTAATTTTCTGTAGTGTTTACAAAAACACAtatctgagaattttttttttaaacttgtgtaTTATTACTAATTCAGCTTTTTATGCTCATGGCATGTGTGTTCTGTCATTGGGTTGTCCTTAAGAACAGACCTTTAATGTAATTAGTGGTCTATCTATAACATTCTTGCATTAAAAGTGTGAGACAGCAGTAAAAGCAAGCAGttcttttgtttaaaacaatGATGTTAATGCATGACTTTTACAACATGAAAATATTGTCTGCATTAATGTCCACATTTTCAATAGTTCTGGAAGCATTTTTCCTATTCATTTTCCCTTTGTTGAAGCAGTCAGTAATACAATACCATcagtaacataaaaatatatataaaaatatttaaaaaa
>TCONS_00037757
ATCATGCAGAGCATCAAGTGTGTGGTGGTGGGAGACGGAGCGGTGGGAAAAACCTGCCTGCTCATCTCCTACACGACCGGCGCCTTCCCCAAAGAGTACATTCCCACCGTCTTCGACAACTACAGCTCCCAGGTCAGCGTGGACAACCGTACCGTCAGCCTCAATCTGTGGGACACCGCGGGTCAGGAGGAGTACGACCGCCTTCGCACGCTGTCCTACCCTCAAACCAACGTCTTCATCATCTGCTTCTCCATCTCCAGCCCTCCGTCCTACGAGAACATCAAGCACAAGTGGCACCCGGAGGTGACACACCACTGTCCTAGCGTGCCCATCCTGCTTGTGGGAACCAAGAGTGATCTCCGCAATGACGCCGACGTGCTGAAGAAGCTGAAGGAGCAGAACCAGGCGCCCATCACGACCCAGCAGGGTCAAGCGCTGGCTCGCCAAATCCACGCCGTCAAGTACCGCGAGTGTTCGGCACTCAGTCAGGACGGCATCAAGGACGTGTTTGCAGACGCAGTGCGTGCCTACCTTAGTCCTCAACCCGTGGCTAACAAGAAGCCCTGTATACTCCTCTGA

Function

symbol description
rhogb Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within response to bacterium. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in dorsal aorta; macrophage; somite 3; and somite 4. Orthologous to human RHOG (ras homolog family member G).

GO:

id name namespace
GO:1902622 regulation of neutrophil migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0009617 response to bacterium biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8877 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within response to bacterium. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in dorsal aorta; macrophage; somite 3; and somite 4. Orthologous to human RHOG (ras homolog family member G).

Ensembl:

ensembl_id ENSDARG00000004301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037756 False 1957 mRNA 0.41 2 30937690 30951909
TCONS_00037757 True 579 mRNA 0.58 1 30950097 30950675

Neighbor

gene id symbol gene type direction distance location
XLOC_019034 slc6a7 coding upstream 106789 30794351 ~ 30830901 (+)
XLOC_019033 trpc2b coding upstream 172157 30746348 ~ 30765533 (+)
XLOC_019032 zgc:110224 coding upstream 194838 30721733 ~ 30742852 (+)
XLOC_019031 clcn5a coding upstream 241095 30662263 ~ 30696595 (+)
XLOC_019030 si:ch211-200p22.4 coding upstream 354604 30563115 ~ 30583086 (+)
XLOC_019036 st6gal1 coding downstream 198529 31150438 ~ 31184035 (+)
XLOC_019037 asl coding downstream 301139 31253048 ~ 31277336 (+)
XLOC_019038 TENM2 coding downstream 482342 31434251 ~ 32008843 (+)
XLOC_019039 NA coding downstream 783280 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 coding downstream 1078727 32030636 ~ 32030752 (+)
XLOC_019021 NA non-coding upstream 751369 30184309 ~ 30186321 (+)
XLOC_019020 NA non-coding upstream 754136 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 910061 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 950794 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 1331240 29606327 ~ 29606450 (+)
XLOC_019041 NA non-coding downstream 1093515 32045424 ~ 32070143 (+)
XLOC_019042 NA non-coding downstream 1126148 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 1454854 32406763 ~ 32411647 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G142248 NA non-coding CI01000027 null 7335871 ~ 7354238 (-)
bowfin (Amia calva) AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding CM030122.1 CM030122.1 11647731 ~ 11662835 (-)
mexican tetra (Astyanax mexicanus) G119726 rhog,LOC107749931,LOC107667433,LOC107673813,LOC107557087,LOC107737593 unknown NC_035910.1 CM008313.1 6288863 ~ 6292980 (+)