XLOC_019036 (st6gal1)


Basic Information

Item Value
gene id XLOC_019036
gene name st6gal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 31150438 ~ 31184035 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00037758
TTGTAGCTGATTCCAGAACTGGCTTTATAGACAAACGCGCACGACGACTGCAGGCAACTTAGCGTTCAAGATCCCAGGGGCTGCTATGGATCGTGTTAGCCTACTTTGGCGATTGAGGCGTCGGGCTCGTCGAGGGGCCCTATGCATGGCACTCTTCTGTTTGACTATGGCTCTCCTGTACACTCTTTGTGCTGAAAACAGCATTCCTGTCACAGATGCCATTTTCGGAGTCAAGGCCAGAACTCGAGCTCAACCAAGAGCACACACAATTGTTAAGGTATTGCGGGGAACAGGAGGGTCAAAGCCCATGTATACTGACCCTCAAAAGCTCCCAGGTGTCATTCCTGGAGATCCTCAAAAGCCTATTCCCATCCTCTCATCATCTAACTTCTCAATGGAGAGCACTTCTAAAGACCACAGTCTCGGGGGCAAAAAGAGAGAGCGTGGGCTCTTTTACTGGCTTCTGGCACAACCACTGACTATTTTTGGAGGCAGACGGAGAGGAGATATGGGGACCGCAATTCGGGATGCTGATGTTTTTAAGCCTAATGGAGCACTCGGAGAGGTCTGGAATGAAGAGATGTCGAGCAGCATGCTGGGAAAAAGGCTGAGGAAAGTTGTGCAGAACTATCAGGCAATGAATAAATATGGAGTCAAGTACCCTGCAACAGTGAGAGCAGCACACCGCTACAAACTCAGTGGACCAGAAATTCTTTGTGAAATTAAGGAGAAAGTTCAGGTCACAACTTTAACACCAGATATGGAGCCATTTTCTGGGTTTCCATGGGGCTCTCAGTTACCTCCACGCCAAATAACCTCTGATGTCGGCCCGTTCAAAACCTGTGCAGTGGTGTCGTCTGCAGGATCTCTCAAAAACTCTGGATTAGGAAAGGAAATAGATTCTCATGACGCAGTGATACGATTCAATGCCGCACCGACAGCTGGTTTTGAGACAGACGTGGGCTCCAAAACAACAGTGCGCCTTATTAATTCACAGTTAATGGCATCTGAAGACCACCATTTCCTCTCCAGCTCTTTGTACAGTGCAGGGATTTTAGTGAGCTGGGATCCTAGCCCTTATTCTTCAGATCTATGGGAGTGGTTCAACAAGACAGATTACCCCATATTTAAACAGTATCAGCGATATCGCCGCTTGCACCCTCAGCAGCCATTTTACATTGTACATCCGCGAATGGAATGGCAGCTGTGGCAGAGAATACAAGACAACATGGGTGAAGCCATCCAAAAAAATCCACCCTCATCAGGCCTGCTGGGCACAGTTTTAATGATGTCCCTGTGTGAAGTGGTACACGTGTACGAGTTCCTGCCATCGCGGCGAAAAACCGAGCTGTGCCACTACTACCAGCGCTTCAGTGATGCTGCCTGCACACTCGGAGCCTACCACCCATTACTCTATGAGAAAAACCTGGTCAAGAGGATGAACCAAGGCTCCGACCGAGATATCTACACACTTGGCAGGGTCACTCTTCCTGGGTTCGCCACATTTAACTGCACTTCCAGCACTCATTCAAAAACGTAATCTGAGAGTGAACTGTTTTGCTCGGTACACTCTCAGAATGTAACAATACAGCGCATGATTAACAAGTATTCATTCTGATCTCTGAGGGAGATCAGGAGTCGGCTTTACGGGTGGAGAACGAAAAACTAACACACTAAAAACGAAGGGTTGTTTATGGAGATTCTTAACTCACACGGACACAAAATAACAGTAGAAGTTCTGTGTAGTTGTAAACTACCAACCATTATTTCCTAGCTTGCCCCATAGTGGAAAATGCAAACTGTTTGCTGTTAATTAACAGAAAAGATCTCAGTATCACATATTTGCCTCTCAATGACATTCAGACACTGCCTAATGTGACATATATACAGGATAGTTAAGCCAAACAAGAAAATTTGTTGGAAATCGAATCATCCTCAGACTATCCTAGATGATGGTGACTTTTTTGTCAAACATTAAAGATGTTTTTGTGCTGAA
>TCONS_00037759
CTATTTGAACCTGCTCATTACCCACAAACACCagctaaattaatatataaacaaaccaCGATTAGATAGAGCCACATTGGCTAATAGGCCgtctgtttttgttattttagccCACCTATGACATGCGGCCGACCGCTTTGCACGACGACCGAAAAAGATAATTCATATTAAAAAACAGCTTGAAATATTTATTTGCTGCATCAATCGGACTCATTCAGCACCCATCACGATGCACGCATTCGGTGTATGATTGCTATTCTAAGCGTGTACATATAATTAGCGTTAGGAGAAAAATGAGGCTGCAGTGTACGCTGCATTGACAGTCGCGGTCGCGCGCACAGACGCCTCTCTTTCGCTTGAGACAACATACCGAAGCATCCGCGCACTACATAATCGTGCAGTATATAAAACATGGCGGTTTATCAACATGCATCTGCTCGCTATATAGATGTCAAATTGTAGAGCATCTCTTCGAACGGTAAAAAGAGGAAAAACGGTCGTGCTTTAGGTTATTATACCAAGAGGGATTATATAACGTGGCTGATCTGTATGCAACAAAAGTCtgagaataaaacaaaatgccaAGAGCAGGCAGCGGAGAAGACTAAATAAACTGACACGAAAAAACATCAGATGAAGATGGCATACAAGATCCCAGGGGCTGCTATGGATCGTGTTAGCCTACTTTGGCGATTGAGGCGTCGGGCTCGTCGAGGGGCCCTATGCATGGCACTCTTCTGTTTGACTATGGCTCTCCTGTACACTCTTTGTGCTGAAAACAGCATTCCTGTCACAGATGCCATTTTCGGAGTCAAGGCCAGAACTCGAGCTCAACCAAGAGCACACACAATTGTTAAGGTATTGCGGGGAACAGGAGGGTCAAAGCCCATGTATACTGACCCTCAAAAGCTCCCAGGTGTCATTCCTGGAGATCCTCAAAAGCCTATTCCCATCCTCTCATCATCTAACTTCTCAATGGAGAGCACTTCTAAAGACCACAGTCTCGGGGGCAAAAAGAGAGAGCGTGGGCTCTTTTACTGGCTTCTGGCACAACCACTGACTATTTTTGGAGGCAGACGGAGAGGAGATATGGGGACCGCAATTCGGGATGCTGATGTTTTTAAGCCTAATGGAGCACTCGGAGAGGTCTGGAATGAAGAGATGTCGAGCAGCATGCTGGGAAAAAGGCTGAGGAAAGTTGTGCAGAACTATCAGGCAATGAATAAATATGGAGTCAAGTACCCTGCAACAGTGAGAGCAGCACACCGCTACAAACTCAGTGGACCAGAAATTCTTTGTGAAATTAAGGAGAAAGTTCAGGTCACAACTTTAACACCAGATATGGAGCCATTTTCTGGGTTTCCATGGGGCTCTCAGTTACCTCCACGCCAAATAACCTCTGATGTCGGCCCGTTCAAAACCTGTGCAGTGGTGTCGTCTGCAGGATCTCTCAAAAACTCTGGATTAGGAAAGGAAATAGATTCTCATGACGCAGTGATACGATTCAATGCCGCACCGACAGCTGGTTTTGAGACAGACGTGGGCTCCAAAACAACAGTGCGCCTTATTAATTCACAGTTAATGGCATCTGAAGACCACCATTTCCTCTCCAGCTCTTTGTACAGTGCAGGGATTTTAGTGAGCTGGGATCCTAGCCCTTATTCTTCAGATCTATGGGAGTGGTTCAACAAGACAGATTACCCCATATTTAAACAGTATCAGCGATATCGCCGCTTGCACCCTCAGCAGCCATTTTACATTGTACATCCGCGAATGGAATGGCAGCTGTGGCAGAGAATACAAGACAACATGGGTGAAGCCATCCAAAAAAATCCACCCTCATCAGGCCTGCTGGGCACAGTTTTAATGATGTCCCTGTGTGAAGTGGTACACGTGTACGAGTTCCTGCCATCGCGGCGAAAAACCGAGCTGTGCCACTACTACCAGCGCTTCAGTGATGCTGCCTGCACACTCGGAGCCTACCACCCATTACTCTATGAGAAAAACCTGGTCAAGAGGATGAACCAAGGCTCCGACCGAGATATCTACACACTTGGCAGGGTCACTCTTCCTGGGTTCGCCACATTTAACTGCACTTCCAGCACTCATTCAAAAACGTAA
>TCONS_00037760
AACATGCATCTGCTCGCTATATAGATGTCAAATTGTAGAGCATCTCTTCGAACGGTAAAAAGAGGAAAAACGGTCGTGCTTTAGGTTATTATACCAAGAGGGATTATATAACGTGGCTGATCTGTATGCAACAAAAGTCtgagaataaaacaaaatgccaAGAGCAGGCAGCGGAGAAGACTAAATAAACTGACACGAAAAAACATCAGATGAAGATGGCATACAAGATCCCAGGGGCTGCTATGGATCGTGTTAGCCTACTTTGGCGATTGAGGCGTCGGGCTCGTCGAGGGGCCCTATGCATGGCACTCTTCTGTTTGACTATGGCTCTCCTGTACACTCTTTGTGCTGAAAACAGCATTCCTGTCACAGATGCCATTTTCGGAGTCAAGGCCAGAACTCGAGCTCAACCAAGAGCACACACAATTGTTAAGGTATTGCGGGGAACAGGAGGGTCAAAGCCCATGTATACTGACCCTCAAAAGCTCCCAGGTGTCATTCCTGGAGATCCTCAAAAGCCTATTCCCATCCTCTCATCATCTAACTTCTCAATGGAGAGCACTTCTAAAGACCACAGTCTCGGGGGCAAAAAGAGAGAGCGTGGGCTCTTTTACTGGCTTCTGGCACAACCACTGACTATTTTTGGAGGCAGACGGAGAGGAGATATGGGGACCGCAATTCGGGATGCTGATGTTTTTAAGCCTAATGGAGCACTCGGAGAGGTCTGGAATGAAGAGATGTCGAGCAGCATGCTGGGAAAAAGGCTGAGGAAAGTTGTGCAGAACTATCAGGCAATGAATAAATATGGAGTCAAGTACCCTGCAACAGTGAGAGCAGCACACCGCTACAAACTCAGTGGACCAGAAATTCTTTGTGAAATTAAGGAGAAAGTTCAGGTCACAACTTTAACACCAGATATGGAGCCATTTTCTGGGTTTCCATGGGGCTCTCAGTTACCTCCACGCCAAATAACCTCTGATGTCGGCCCGTTCAAAACCTGTGCA

Function

symbol description
st6gal1 Predicted to enable beta-galactoside alpha-2,6-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in gill; liver; nervous system; and pleuroperitoneal region. Orthologous to human ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003835 beta-galactoside alpha-2,6-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00514 Other types of O-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-060322-3 Predicted to enable beta-galactoside alpha-2,6-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in gill; liver; nervous system; and pleuroperitoneal region. Orthologous to human ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000044514

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00037758 False 1996 mRNA 0.46 8 31150438 31184035
TCONS_00037759 False 2121 mRNA 0.47 8 31150773 31183579
TCONS_00037760 True 1004 mRNA 0.47 4 31151197 31176249

Neighbor

gene id symbol gene type direction distance location
XLOC_019035 rhogb coding upstream 198529 30937690 ~ 30951909 (+)
XLOC_019034 slc6a7 coding upstream 319537 30794351 ~ 30830901 (+)
XLOC_019033 trpc2b coding upstream 384905 30746348 ~ 30765533 (+)
XLOC_019032 zgc:110224 coding upstream 407586 30721733 ~ 30742852 (+)
XLOC_019031 clcn5a coding upstream 453843 30662263 ~ 30696595 (+)
XLOC_019037 asl coding downstream 69013 31253048 ~ 31277336 (+)
XLOC_019038 TENM2 coding downstream 250216 31434251 ~ 32008843 (+)
XLOC_019039 NA coding downstream 551154 31735189 ~ 31737398 (+)
XLOC_019040 CABZ01006935.1 coding downstream 846601 32030636 ~ 32030752 (+)
XLOC_019041 NA coding downstream 861389 32045424 ~ 32070143 (+)
XLOC_019021 NA non-coding upstream 964117 30184309 ~ 30186321 (+)
XLOC_019020 NA non-coding upstream 966884 30163899 ~ 30183554 (+)
XLOC_019017 NA non-coding upstream 1122809 30022933 ~ 30027629 (+)
XLOC_019015 CU855895.2 non-coding upstream 1163542 29986796 ~ 29986896 (+)
XLOC_019014 CR847571.3 non-coding upstream 1543988 29606327 ~ 29606450 (+)
XLOC_019042 NA non-coding downstream 894022 32078057 ~ 32099320 (+)
XLOC_019044 NA non-coding downstream 1222728 32406763 ~ 32411647 (+)

Expression


Co-expression Network