XLOC_001907 (hvcn1)


Basic Information

Item Value
gene id XLOC_001907
gene name hvcn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8401929 ~ 8412964 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003760
aaaaaacttccatGTCACCTCCAGGCTGCATTCTGATCCAGTGCAGTGGATCACGTTCGTGACTGTGTAGAGGCGGAGTTAAGGGTCGAAGTTTTTCACAGAATTCGCATTGTTGTTCCCGAAAACTGAGAACAAATGCTGCTTTAGCCATTAGCAACATCGTCCCAGCAACACAACAGcttTCAACTCATGTGACCACCTGCCAAAAATGTCCCGGTATCTGAAGCATTTCACCGCGGTGGGTGATAATAAAAACGCTGTCCCAACATGGCATGAGGAAGACACATCCCACCATGTCACGACATTGCACGATGCCCCTGATGGCCTGGAGGTTTCAACAGGACAGCATTTGGGACAGCTCAGCTTCAGGGACTCCCTACGAAAGCTGTACAGTACAGAGAGATTCCAGATTGTTGTTGTGTGCTTGGTTGTCTTGGATGCCATTTTCGTACTATGCGAGTTGCTTATTGACTTGTCTATCATTGAAGCAGACCACCACAGAATAGCCCCACAGGTATTCCACTATCTCAGCCTTGCCCTTCTCACATTCTTCATGGTAGAGTTGGCTGGAAAGATCTTTGCCTATCGCCTAGAATTCCTTCACCATAAGTTTGAGGTGTTTGATGGGATTGTGGTGGTCGTATCCtttattttggatattatatacATCTCAAAGGAAGATGCGTTCGATGCCATGGGTCTCCTGATCTTGCTCAGGCTCTGGAGAGTGGCCAGGATCATAAATGGTATCTTGGTGTCTGTGCAAAATCGTGCCAATCACAGAGTTGAAAAACTAAAGGAGATCAACGAAAGCCTCGTTCATCAAGTCAATGAGCTTAAAGAGCAGAACACAAAAATGGACCAAGAAAACGTCAGGCTTCGTGCGCTCCTAAAAGATCACAGCATTGACTTTTAAAGCTCTGGGAGTTACTCATTAAACAAACAACATGGGAATGAACTTAAGACCAATCATGTATGTTTATTCTGTCTAATGTGAAGATGTTGCTTTAGTGTGATGAGTTCATCACTTAAAGACAATCTAATCTCAACCTCCGCAACCTGGCAGATCTTTAACTAGATGCATTAGAGCAAATGGTTGTTAAAGCCAGTGACTCACGTAGATCAAATCACTAGAAAGGGAAATATGTAATCCACATAAGGGATACTGGGTTTTTCTATATACTGGAGTTATAAACTTGCCTCAGTAGATTATaagctgatttttatttttattctgaattgttaatgttattagaaaaaaatcattgttgttgttttatccatgAATCGAACATTTCTCTTTCTGGATGTAAATATGCATTCGAAAAACTGAAAGCTATGCAATAAACACTCTTTTGTAAAA
>TCONS_00003761
GCAACACAACAGagcttTCAACTCATGTGACCACCTGCCAAAAATGTCCCGGTATCTGAAGCATTTCACCGCGGTGGGTGATAATAAAAACGCTGTCCCAACATGGCATGAGGAAGACACATCCCACCATGTCACGACATTGCACGATGCCCCTGATGGCCTGGAGGTTTCAACAGGACAGCATTTGGGACAGCTCAGCTTCAGGGACTCCCTACGAAAGCTGTACAGTACAGAGAGATTCCAGGTAAACAATTGCACTATTGgcctgtgtatatatacacatgttaatgttgtttacatCATTGCAAATTAACCGGCGACTGTTATTTTGTTGCTTAGATTGTTGTTGTGTGCTTGGTTGTCTTGGATGCCATTTTCGTACTATGCGAGTTGCTTATTGACTTGTCTATCATTGAAGCAGACCACCACAGAATAGCCCCACAGGTGAGTGCGCTTCAGATGCCCATACAGCAAGTTTGACTGAATATAATATggtatccctgctgaaaaatccagcttaaaccagcctaggctggttggctggtttaggctgg

Function

symbol description
hvcn1 Enables voltage-gated proton channel activity and zinc ion binding activity. Acts upstream of or within proton transmembrane transport and response to zinc ion. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; neutrophil; and pleuroperitoneal region. Orthologous to human HVCN1 (hydrogen voltage gated channel 1).

GO:

id name namespace
GO:0071294 cellular response to zinc ion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0071467 cellular response to pH biological_process
GO:0006811 ion transport biological_process
GO:0010043 response to zinc ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030171 voltage-gated proton channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-040718-36 Enables voltage-gated proton channel activity and zinc ion binding activity. Acts upstream of or within proton transmembrane transport and response to zinc ion. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; neutrophil; and pleuroperitoneal region. Orthologous to human HVCN1 (hydrogen voltage gated channel 1).

Ensembl:

ensembl_id ENSDARG00000040338

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003760 False 1363 mRNA 0.41 6 8401929 8412964
TCONS_00003761 True 554 lncRNA 0.46 2 8402096 8408875

Neighbor

gene id symbol gene type direction distance location
XLOC_001906 CU682363.1 coding upstream 58624 8343188 ~ 8343305 (+)
XLOC_001905 mtrex coding upstream 135835 8197827 ~ 8266094 (+)
XLOC_001904 pstpip2 coding upstream 259716 8101729 ~ 8142213 (+)
XLOC_001903 sub1a coding upstream 303830 8091144 ~ 8098099 (+)
XLOC_001902 NA coding upstream 364040 8036184 ~ 8037889 (+)
XLOC_001908 pptc7b coding downstream 24966 8437930 ~ 8468949 (+)
XLOC_001909 BX682234.1 coding downstream 68696 8481660 ~ 8484001 (+)
XLOC_001910 si:ch211-193e13.5 coding downstream 114232 8527196 ~ 8530065 (+)
XLOC_001911 tbc1d10ab coding downstream 121786 8534750 ~ 8576218 (+)
XLOC_001912 aplnrb coding downstream 216311 8629275 ~ 8631361 (+)
XLOC_001901 NA non-coding upstream 409470 7988025 ~ 7992459 (+)
XLOC_001900 NA non-coding upstream 417347 7978517 ~ 7984582 (+)
XLOC_001899 NA non-coding upstream 500041 7870609 ~ 7901888 (+)
XLOC_001913 NA non-coding downstream 233995 8646959 ~ 8650855 (+)
XLOC_001917 NA non-coding downstream 296521 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 360472 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 449557 8862521 ~ 8868895 (+)
XLOC_001926 NA non-coding downstream 709429 9122393 ~ 9125863 (+)

Expression


Co-expression Network